Construct: ORF ccsbBroadEn_11776
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011932.1_s300c1, BRDN0000391012
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SUMF2 (25870)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 25870 | SUMF2 | sulfatase modifying factor 2 | NM_001366649.2 | 30.9% | 7.4% | 1_95del;255_513del |
| 2 | human | 25870 | SUMF2 | sulfatase modifying factor 2 | NM_001146333.2 | 24.8% | 24.8% | 1_480del |
| 3 | human | 25870 | SUMF2 | sulfatase modifying factor 2 | NM_001042470.3 | 24.4% | 24.4% | 1_492del |
| 4 | human | 25870 | SUMF2 | sulfatase modifying factor 2 | NM_001042469.3 | 18.5% | 18.5% | 1_699del |
| 5 | human | 25870 | SUMF2 | sulfatase modifying factor 2 | NM_015411.4 | 17.6% | 17.6% | 1_744del |
| 6 | human | 25870 | SUMF2 | sulfatase modifying factor 2 | NM_001042468.3 | 17.4% | 17.4% | 1_753del |
| 7 | human | 25870 | SUMF2 | sulfatase modifying factor 2 | NM_001366647.2 | 15.7% | 10% | 1_699del;774_891del;977_1011del |
| 8 | human | 25870 | SUMF2 | sulfatase modifying factor 2 | NM_001366648.2 | 15% | 9.6% | 1_744del;819_936del;1022_1056del |
| 9 | human | 25870 | SUMF2 | sulfatase modifying factor 2 | XM_011515254.3 | 12.4% | 9.8% | (many diffs) |
| 10 | human | 25870 | SUMF2 | sulfatase modifying factor 2 | XR_001744617.1 | 7.2% | 1_853del;928_1045del;1131_2191del | |
| 11 | human | 25870 | SUMF2 | sulfatase modifying factor 2 | XR_001744616.1 | 7.1% | 1_898del;973_1090del;1176_2236del | |
| 12 | human | 25870 | SUMF2 | sulfatase modifying factor 2 | XR_002956418.1 | 7% | 1_1030del;1190_2250del | |
| 13 | mouse | 67902 | Sumf2 | sulfatase modifying factor 2 | NM_026445.2 | 15% | 15.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 225
- ORF length:
- 159
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCG CGTCCTCCGG GGGGCATCCT GGATCGACAC AGCTGATGGC TCTGCCAATC 121 ACCGGGCCCG GGTCACCACC AGGATGGGCA ACACTCCAGA TTCAGCCTCA GACAACCTCG 181 GTTTCCGCTG TGCTGCAGAC GCAGGCCGGC CGCCAGGGGA GCTGTACCCA ACTTTCTTGT 241 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c