Construct: ORF ccsbBroadEn_11804
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002095.1_s300c1, BRDN0000390949
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DNM3 (26052)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26052 | DNM3 | dynamin 3 | NM_001278252.2 | 99.9% | 100% | 243C>T |
| 2 | human | 26052 | DNM3 | dynamin 3 | NM_001350205.2 | 98.1% | 98.2% | 243C>T;1546_1575del |
| 3 | human | 26052 | DNM3 | dynamin 3 | XM_017000989.1 | 97.5% | 97.3% | (many diffs) |
| 4 | human | 26052 | DNM3 | dynamin 3 | XM_017000990.2 | 96.1% | 90.1% | 243C>T;1546_1591del;1692_1693insTAAAGATGATGAGAACATT |
| 5 | human | 26052 | DNM3 | dynamin 3 | XM_017000991.1 | 96.1% | 90.1% | 243C>T;1546_1591del;1692_1693insTAAAGATGATGAGAACATT |
| 6 | human | 26052 | DNM3 | dynamin 3 | XM_017000988.1 | 93.4% | 93.2% | (many diffs) |
| 7 | human | 26052 | DNM3 | dynamin 3 | XM_017000992.1 | 83.1% | 77.7% | (many diffs) |
| 8 | human | 26052 | DNM3 | dynamin 3 | XR_001737107.1 | 81.1% | (many diffs) | |
| 9 | human | 26052 | DNM3 | dynamin 3 | XM_017000984.1 | 65.3% | 65.2% | (many diffs) |
| 10 | human | 26052 | DNM3 | dynamin 3 | XM_017000985.1 | 65.3% | 65.2% | (many diffs) |
| 11 | human | 26052 | DNM3 | dynamin 3 | XM_017000983.1 | 65% | 64.9% | (many diffs) |
| 12 | human | 26052 | DNM3 | dynamin 3 | NM_001350206.2 | 64.5% | 64.4% | (many diffs) |
| 13 | human | 26052 | DNM3 | dynamin 3 | XM_017000982.2 | 64.5% | 64.4% | (many diffs) |
| 14 | human | 26052 | DNM3 | dynamin 3 | NM_001136127.3 | 64.4% | 64.3% | (many diffs) |
| 15 | human | 26052 | DNM3 | dynamin 3 | NM_015569.5 | 64.1% | 64% | (many diffs) |
| 16 | human | 26052 | DNM3 | dynamin 3 | NM_001350204.2 | 63.7% | 63.6% | (many diffs) |
| 17 | human | 26052 | DNM3 | dynamin 3 | XM_005245079.1 | 63.4% | 63.3% | (many diffs) |
| 18 | human | 26052 | DNM3 | dynamin 3 | XM_017000979.1 | 60.8% | 60.8% | (many diffs) |
| 19 | human | 26052 | DNM3 | dynamin 3 | XM_017000978.1 | 60.7% | 60.7% | (many diffs) |
| 20 | human | 26052 | DNM3 | dynamin 3 | XM_017000977.1 | 60.3% | 60.3% | (many diffs) |
| 21 | human | 26052 | DNM3 | dynamin 3 | XM_017000976.1 | 60.1% | 60% | (many diffs) |
| 22 | human | 26052 | DNM3 | dynamin 3 | XM_017000986.1 | 59.2% | 58.5% | (many diffs) |
| 23 | human | 26052 | DNM3 | dynamin 3 | XM_017000980.1 | 55.1% | 54.5% | (many diffs) |
| 24 | human | 26052 | DNM3 | dynamin 3 | XM_017000987.1 | 50.8% | 50.7% | (many diffs) |
| 25 | human | 26052 | DNM3 | dynamin 3 | XR_001737110.1 | 22% | (many diffs) | |
| 26 | human | 26052 | DNM3 | dynamin 3 | NR_146559.2 | 21.6% | (many diffs) | |
| 27 | human | 26052 | DNM3 | dynamin 3 | XR_001737108.1 | 21.6% | (many diffs) | |
| 28 | human | 26052 | DNM3 | dynamin 3 | XR_001737111.1 | 20.3% | (many diffs) | |
| 29 | mouse | 103967 | Dnm3 | dynamin 3 | XM_006496605.3 | 85.3% | 90.2% | (many diffs) |
| 30 | mouse | 103967 | Dnm3 | dynamin 3 | NM_172646.2 | 58.2% | 63.4% | (many diffs) |
| 31 | mouse | 103967 | Dnm3 | dynamin 3 | XM_006496603.3 | 58% | 63.2% | (many diffs) |
| 32 | mouse | 103967 | Dnm3 | dynamin 3 | XM_006496604.3 | 58% | 63.2% | (many diffs) |
| 33 | mouse | 103967 | Dnm3 | dynamin 3 | NM_001038619.1 | 57.9% | 63.1% | (many diffs) |
| 34 | mouse | 103967 | Dnm3 | dynamin 3 | XM_006496602.3 | 57.5% | 62.7% | (many diffs) |
| 35 | mouse | 103967 | Dnm3 | dynamin 3 | XM_006496601.3 | 57.3% | 62.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1731
- ORF length:
- 1665
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG GAACCGGGAG ATGGAGGAGC TGATCCCGCT GGTGAACCGT CTGCAGGACG 121 CGTTTTCGGC GCTGGGACAG AGCTGCCTGC TGGAGCTGCC GCAGATCGCC GTGGTGGGCG 181 GCCAGAGCGC CGGCAAGAGC TCGGTGCTCG AGAACTTCGT GGGCAGGGAC TTTCTCCCTC 241 GAGGGTCGGG CATTGTAACA AGACGACCTC TTGTGCTGCA GCTTGTTACT TCTAAAGCAG 301 AATATGCTGA GTTTCTACAT TGCAAAGGAA AGAAATTTAC AGATTTTGAT GAAGTTCGCC 361 TTGAGATTGA AGCAGAAACA GATCGCGTGA CTGGAATGAA TAAAGGCATT TCCTCCATAC 421 CCATTAATTT ACGAGTCTAT TCCCCACACG TGTTAAATCT AACCCTTATT GATCTACCTG 481 GAATAACTAA AGTGCCTGTG GGAGATCAGC CACCAGATAT CGAGTATCAG ATCAGAGAAA 541 TGATTATGCA GTTCATCACG AGGGAGAACT GTCTGATTTT AGCTGTTACT CCAGCCAACA 601 CTGATCTTGC AAACTCAGAT GCGCTGAAGC TAGCTAAAGA AGTTGATCCT CAAGGTCTGA 661 GAACCATTGG AGTTATCACC AAACTGGACC TTATGGATGA AGGAACGGAT GCCAGGGATG 721 TTCTAGAGAA CAAACTGTTG CCTCTTCGCA GGGGTTACGT GGGGGTGGTA AACAGAAGCC 781 AGAAGGACAT AGATGGGAAG AAGGACATAA AGGCAGCCAT GCTGGCAGAG AGGAAGTTTT 841 TCCTTTCCCA CCCGGCTTAC AGACATATCG CTGACCGAAT GGGAACCCCA CACCTGCAGA 901 AGGTCCTTAA TCAGCAACTT ACCAACCACA TTCGGGATAC CCTACCAAAC TTCAGGAACA 961 AACTACAGGG ACAGTTGCTC TCCATAGAAC ATGAAGTAGA AGCCTACAAA AATTTCAAAC 1021 CAGAAGACCC AACAAGGAAG ACCAAAGCAT TGCTGCAGAT GGTTCAGCAA TTTGCTGTGG 1081 ACTTTGAGAA GAGAATTGAA GGGTCAGGGG ATCAAGTAGA TACCCTGGAA CTCTCAGGTG 1141 GTGCTAAAAT CAATCGTATT TTTCATGAAC GCTTTCCTTT TGAGATAGTA AAGATGGAGT 1201 TCAATGAGAA AGAATTGCGA AGAGAAATAA GCTATGCAAT CAAAAACATA CATGGTATCA 1261 GGACAGGGTT GTTTACTCCA GACATGGCAT TTGAAGCGAT AGTCAAGAAA CAGATTGTAA 1321 AGTTGAAAGG GCCTTCCTTG AAGAGTGTGG ATCTGGTAAT ACAAGAATTA ATCAACACTG 1381 TGAAGAAGTG TACCAAAAAA CTGGCAAACT TCCCCAGACT CTGCGAGGAA ACGGAAAGGA 1441 TTGTTGCTAA CCACATTCGT GAGCGAGAAG GGAAGACAAA GGACCAGGTA TTGCTATTGA 1501 TTGACATTCA AGTCTCTTAC ATCAACACCA ACCATGAAGA CTTCATTGGC TTCGCAAATG 1561 CTCAGCAGAG GAGCAGTCAG GTTCACAAGA AAACCACAGT TGGAAATCAG GTGATTCGCA 1621 AGGGGTGGCT CACCATCAGC AACATTGGCA TCATGAAAGG CGGCTCGAAG GGATACTGGT 1681 TCGTCCTTAC TGCGGAAAGC TTGTCCTGGT ATAAAGATGA TGAGAACATT TACCCAACTT 1741 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac