Transcript: Mouse XM_006496601.3

PREDICTED: Mus musculus dynamin 3 (Dnm3), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Dnm3 (103967)
Length:
7847
CDS:
506..3127

Additional Resources:

NCBI RefSeq record:
XM_006496601.3
NBCI Gene record:
Dnm3 (103967)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006496601.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000380701 GGCGTTTGAGGCAATAGTTAA pLKO_005 1726 CDS 100% 13.200 18.480 N Dnm3 n/a
2 TRCN0000382310 CCCAACGAAGGCTGACGATAA pLKO_005 2844 CDS 100% 10.800 15.120 N Dnm3 n/a
3 TRCN0000091645 CGTGTTAAATCTAACGCTAAT pLKO.1 889 CDS 100% 10.800 15.120 N Dnm3 n/a
4 TRCN0000091644 CCCACTATAATCCGTCCACTA pLKO.1 3086 CDS 100% 4.050 5.670 N Dnm3 n/a
5 TRCN0000091647 CATCTCTTCTATACCCATTAA pLKO.1 847 CDS 100% 13.200 9.240 N Dnm3 n/a
6 TRCN0000051406 CGAGGGAGAACTGTCTGATTT pLKO.1 999 CDS 100% 13.200 9.240 N DNM3 n/a
7 TRCN0000091643 CCGTTTAGTTATTGTGACTAT pLKO.1 4012 3UTR 100% 4.950 3.465 N Dnm3 n/a
8 TRCN0000379702 AGCCGCCAGATATCGAGTATC pLKO_005 948 CDS 100% 10.800 6.480 N Dnm3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006496601.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11804 pDONR223 100% 57.3% 62.4% None (many diffs) n/a
2 ccsbBroad304_11804 pLX_304 0% 57.3% 62.4% V5 (many diffs) n/a
3 TRCN0000468730 GATCTCCAGAATTACCCCTGCCCC pLX_317 23.8% 57.3% 62.4% V5 (many diffs) n/a
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