Construct: ORF ccsbBroadEn_11861
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001568.1_s300c1, BRDN0000390996
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- R3HCC1L (27291)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 27291 | R3HCC1L | R3H domain and coiled-coil ... | NM_001256621.2 | 99.8% | 99.4% | 143A>G |
| 2 | human | 27291 | R3HCC1L | R3H domain and coiled-coil ... | NM_001256620.1 | 23.5% | 23.5% | 1_1783del;1784_1785insT |
| 3 | human | 27291 | R3HCC1L | R3H domain and coiled-coil ... | NM_001351010.2 | 23.5% | 23.3% | 1_1783del;1784_1785insT;1925A>G |
| 4 | human | 27291 | R3HCC1L | R3H domain and coiled-coil ... | NM_001351011.2 | 23.5% | 23.3% | 1_1783del;1784_1785insT;1925A>G |
| 5 | human | 27291 | R3HCC1L | R3H domain and coiled-coil ... | NM_001351012.2 | 23.5% | 23.3% | 1_1783del;1784_1785insT;1925A>G |
| 6 | human | 27291 | R3HCC1L | R3H domain and coiled-coil ... | NM_001351013.2 | 23.5% | 23.3% | 1_1783del;1784_1785insT;1925A>G |
| 7 | human | 27291 | R3HCC1L | R3H domain and coiled-coil ... | NM_001351014.2 | 23.5% | 23.3% | 1_1783del;1784_1785insT;1925A>G |
| 8 | human | 27291 | R3HCC1L | R3H domain and coiled-coil ... | NM_001351015.2 | 23.5% | 23.3% | 1_1783del;1784_1785insT;1925A>G |
| 9 | human | 27291 | R3HCC1L | R3H domain and coiled-coil ... | NM_001351016.2 | 23.5% | 23.3% | 1_1783del;1784_1785insT;1925A>G |
| 10 | human | 27291 | R3HCC1L | R3H domain and coiled-coil ... | NM_001351017.2 | 23.5% | 23.3% | 1_1783del;1784_1785insT;1925A>G |
| 11 | human | 27291 | R3HCC1L | R3H domain and coiled-coil ... | NM_014472.5 | 23.5% | 23.3% | 1_1783del;1784_1785insT;1925A>G |
| 12 | human | 27291 | R3HCC1L | R3H domain and coiled-coil ... | NM_138469.3 | 23.5% | 23.3% | 1_1783del;1784_1785insT;1925A>G |
| 13 | human | 27291 | R3HCC1L | R3H domain and coiled-coil ... | XM_017016081.1 | 23.5% | 23.3% | 1_1783del;1784_1785insT;1925A>G |
| 14 | human | 27291 | R3HCC1L | R3H domain and coiled-coil ... | XM_011539649.1 | 23.3% | 23.1% | 1_1804del;1805_1806insT;1946A>G |
| 15 | human | 27291 | R3HCC1L | R3H domain and coiled-coil ... | NM_001256619.2 | 23.1% | 22.9% | 1_1824del;1826A>T;1967A>G |
| 16 | human | 27291 | R3HCC1L | R3H domain and coiled-coil ... | XM_011539640.1 | 23.1% | 22.9% | 1_1824del;1826A>T;1967A>G |
| 17 | human | 27291 | R3HCC1L | R3H domain and coiled-coil ... | XM_011539641.1 | 23.1% | 22.9% | 1_1824del;1826A>T;1967A>G |
| 18 | human | 27291 | R3HCC1L | R3H domain and coiled-coil ... | XM_011539642.1 | 23.1% | 22.9% | 1_1824del;1826A>T;1967A>G |
| 19 | human | 27291 | R3HCC1L | R3H domain and coiled-coil ... | XM_011539643.1 | 23.1% | 22.9% | 1_1824del;1826A>T;1967A>G |
| 20 | human | 27291 | R3HCC1L | R3H domain and coiled-coil ... | XM_011539644.2 | 23.1% | 22.9% | 1_1824del;1826A>T;1967A>G |
| 21 | human | 27291 | R3HCC1L | R3H domain and coiled-coil ... | XM_011539645.2 | 23.1% | 22.9% | 1_1824del;1826A>T;1967A>G |
| 22 | human | 27291 | R3HCC1L | R3H domain and coiled-coil ... | XM_011539646.1 | 23.1% | 22.9% | 1_1824del;1826A>T;1967A>G |
| 23 | human | 27291 | R3HCC1L | R3H domain and coiled-coil ... | XM_011539648.1 | 23.1% | 22.9% | 1_1824del;1826A>T;1967A>G |
| 24 | human | 27291 | R3HCC1L | R3H domain and coiled-coil ... | XM_017016074.1 | 23.1% | 22.9% | 1_1824del;1826A>T;1967A>G |
| 25 | human | 27291 | R3HCC1L | R3H domain and coiled-coil ... | XM_024447941.1 | 23.1% | 22.9% | 1_1824del;1826A>T;1967A>G |
| 26 | human | 27291 | R3HCC1L | R3H domain and coiled-coil ... | XM_011539639.1 | 22.9% | 22.7% | 1_1845del;1847A>T;1988A>G |
| 27 | mouse | 52013 | R3hcc1l | R3H domain and coiled-coil ... | XM_006527182.3 | 64.8% | 66.6% | (many diffs) |
| 28 | mouse | 52013 | R3hcc1l | R3H domain and coiled-coil ... | NM_177464.4 | 21.3% | 21.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 618
- ORF length:
- 552
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTT ATCAGGGAAT ACCAAGAGCA GAGAGAGCAT CCAGGAACCT AGATCTGATT 121 ACTACAATCA TGAAGTTCCT GATATTGACC TCAGTGATTG TGAATTCCCA CATGTCATTG 181 AAATTTATGA CTTTCCCCAA GAATTTCGTA CTGAAGACCT TCTACGGGTT TTCTGCAGTT 241 ATCAAAAGAA AGGATTTGAT ATTAAATGGG TGGATGATAC ACATGCCCTA GGAGTATTCT 301 CCAGTCCAAT TACAGCTCGT GATGCGTTGG GTATTAAACA CACCATGGTG AAGATTCGTC 361 CCTTGTCACA GGCCACAAGA GCAGCCAAGG CCAAAGCTAG AGCTTATGCT GAGTTCCTCC 421 AGCCAGCAAA GGAGCGTCCT GAGACTTCAG CAGCCCTAGC CAGAAGGTTA GTCATCAGTG 481 CCCTTGGGGT TCGAAGTAAG CAGAGCAAAA CCGAACGAGA AGCAGAGCTC AAGAAACTGC 541 AAGAAGCCAG AGAGAGAAAG CGGTTGGAAG CCAAGCAACG GGAAGACATC TGGGAAGGCA 601 GAGACCAGTC TACAGTTTGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 661 gcttatcaat ttgttgcaac gaac