Construct: ORF ccsbBroadEn_11864
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005696.1_s300c1, BRDN0000397719
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TNRC6A (27327)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 27327 | TNRC6A | trinucleotide repeat contai... | XM_017023154.1 | 9.4% | 9.4% | 1_4611del |
| 2 | human | 27327 | TNRC6A | trinucleotide repeat contai... | XM_005255257.4 | 9.4% | 9.4% | 1_4644del |
| 3 | human | 27327 | TNRC6A | trinucleotide repeat contai... | XM_017023153.1 | 9.4% | 9.4% | 1_4644del |
| 4 | human | 27327 | TNRC6A | trinucleotide repeat contai... | XM_017023152.2 | 8.8% | 8.8% | 1_5004del |
| 5 | human | 27327 | TNRC6A | trinucleotide repeat contai... | XM_024450233.1 | 8.6% | 8.6% | 1_5106del |
| 6 | human | 27327 | TNRC6A | trinucleotide repeat contai... | XM_017023150.2 | 8.4% | 8.4% | 1_5214del |
| 7 | human | 27327 | TNRC6A | trinucleotide repeat contai... | XM_024450232.1 | 8.4% | 8.4% | 1_5250del |
| 8 | human | 27327 | TNRC6A | trinucleotide repeat contai... | XM_017023148.2 | 8.4% | 8.4% | 1_5253del |
| 9 | human | 27327 | TNRC6A | trinucleotide repeat contai... | NM_001330520.3 | 8.4% | 8.4% | 1_5256del |
| 10 | human | 27327 | TNRC6A | trinucleotide repeat contai... | NM_001351850.2 | 8.3% | 8.3% | 1_5283del |
| 11 | human | 27327 | TNRC6A | trinucleotide repeat contai... | XM_017023146.1 | 8.2% | 8.2% | 1_5355del |
| 12 | human | 27327 | TNRC6A | trinucleotide repeat contai... | XM_017023145.2 | 8.2% | 8.2% | 1_5361del |
| 13 | human | 27327 | TNRC6A | trinucleotide repeat contai... | XM_017023144.2 | 8.2% | 8.2% | 1_5397del |
| 14 | human | 27327 | TNRC6A | trinucleotide repeat contai... | NM_014494.4 | 8.2% | 8.2% | 1_5403del |
| 15 | human | 27327 | TNRC6A | trinucleotide repeat contai... | XM_024450231.1 | 8.1% | 8.1% | 1_5430del |
| 16 | mouse | 233833 | Tnrc6a | trinucleotide repeat contai... | XM_017322205.1 | 8.9% | 9.3% | (many diffs) |
| 17 | mouse | 233833 | Tnrc6a | trinucleotide repeat contai... | XM_017322206.1 | 8.9% | 9.3% | (many diffs) |
| 18 | mouse | 233833 | Tnrc6a | trinucleotide repeat contai... | XM_017322204.1 | 8.1% | 8.4% | (many diffs) |
| 19 | mouse | 233833 | Tnrc6a | trinucleotide repeat contai... | XM_017322203.1 | 8% | 8.3% | (many diffs) |
| 20 | mouse | 233833 | Tnrc6a | trinucleotide repeat contai... | XM_011241763.1 | 8% | 8.3% | (many diffs) |
| 21 | mouse | 233833 | Tnrc6a | trinucleotide repeat contai... | NM_144925.3 | 8% | 8.3% | (many diffs) |
| 22 | mouse | 233833 | Tnrc6a | trinucleotide repeat contai... | XM_006507708.2 | 7.9% | 8.3% | (many diffs) |
| 23 | mouse | 233833 | Tnrc6a | trinucleotide repeat contai... | XM_011241762.1 | 7.9% | 8.2% | (many diffs) |
| 24 | mouse | 233833 | Tnrc6a | trinucleotide repeat contai... | XM_011241760.1 | 7.8% | 8.1% | (many diffs) |
| 25 | mouse | 233833 | Tnrc6a | trinucleotide repeat contai... | XM_017322201.1 | 7.8% | 8.1% | (many diffs) |
| 26 | mouse | 233833 | Tnrc6a | trinucleotide repeat contai... | XM_011241758.1 | 7.8% | 8.1% | (many diffs) |
| 27 | mouse | 233833 | Tnrc6a | trinucleotide repeat contai... | XM_006507705.1 | 7.8% | 8.1% | (many diffs) |
| 28 | mouse | 233833 | Tnrc6a | trinucleotide repeat contai... | XM_011241757.1 | 7.7% | 8% | (many diffs) |
| 29 | mouse | 233833 | Tnrc6a | trinucleotide repeat contai... | XM_017322202.1 | 6% | 5.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 549
- ORF length:
- 483
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCA GCACGGCCCG CTGATCACAT TCCACCTGAA CCTCCCTCAC GGAAATGCTC 121 TGGTCCGCTA CAGTTCAAAA GAAGAGGTAG TGAAGGCACA AAAGTCTCTG CACATGTGTG 181 TACTGGGGAA CACTACTATT CTTGCTGAGT TTGCCAGTGA AGAGGAGATC AGTCGTTTCT 241 TTGCACAAAG CCAGTCTCTG ACCCCTTCTC CCGGCTGGCA GTCTCTCGGG TCCAGCCAGA 301 GCCGGCTGGG CTCCCTCGAC TGTTCCCACT CATTCTCCAG CCGGACCGAT CTCAATCACT 361 GGAATGGTGC TGGGCTGTCG GGAACTAACT GTGGAGACCT TCACGGCACT TCACTCTGGG 421 GGACCCCGCA TTATTCCACA AGCCTGTGGG GTCCCCCAAG CAGCAGCGAC CCCCGAGGAA 481 TTAGCAGCCC ATCTCCCATT AACGCTTTTC TTTCTGTTGA CCACCTGGGT GGGGGTGGAG 541 AGTCCATGTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 601 tttgttgcaa cgaac