Construct: ORF ccsbBroadEn_11951
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018297.1_s300c1, BRDN0000395835
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TRAPPC12 (51112)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51112 | TRAPPC12 | trafficking protein particl... | XM_011510356.1 | 99.9% | 100% | 774T>C |
| 2 | human | 51112 | TRAPPC12 | trafficking protein particl... | XM_011510355.2 | 90.1% | 90.2% | 1_123del;897T>C |
| 3 | human | 51112 | TRAPPC12 | trafficking protein particl... | NM_001321102.1 | 51.5% | 51.5% | 1_1068del;1842T>C |
| 4 | human | 51112 | TRAPPC12 | trafficking protein particl... | NM_016030.6 | 51.5% | 51.5% | 1_1068del;1842T>C |
| 5 | human | 51112 | TRAPPC12 | trafficking protein particl... | XM_011510350.2 | 46.3% | 46.3% | 1_1068del;1164_1165ins114;1728T>C |
| 6 | human | 51112 | TRAPPC12 | trafficking protein particl... | XM_017004257.1 | 36.9% | 31.8% | (many diffs) |
| 7 | human | 51112 | TRAPPC12 | trafficking protein particl... | XR_426956.3 | 35% | 1_1704del;2409_2410ins101;2741_2853del | |
| 8 | human | 51112 | TRAPPC12 | trafficking protein particl... | XR_001738762.1 | 33.3% | (many diffs) | |
| 9 | human | 51112 | TRAPPC12 | trafficking protein particl... | XM_011510352.2 | 28.5% | 28% | (many diffs) |
| 10 | human | 51112 | TRAPPC12 | trafficking protein particl... | XM_011510353.2 | 23.4% | 21.6% | (many diffs) |
| 11 | human | 51112 | TRAPPC12 | trafficking protein particl... | XM_011510354.2 | 21.5% | 20.9% | (many diffs) |
| 12 | mouse | 217449 | Trappc12 | trafficking protein particl... | NM_001161410.1 | 41.2% | 45.1% | (many diffs) |
| 13 | mouse | 217449 | Trappc12 | trafficking protein particl... | NM_178811.4 | 41.2% | 45.1% | (many diffs) |
| 14 | mouse | 217449 | Trappc12 | trafficking protein particl... | XM_006515057.2 | 41.2% | 45.1% | (many diffs) |
| 15 | mouse | 217449 | Trappc12 | trafficking protein particl... | XM_006515058.2 | 41.2% | 45.1% | (many diffs) |
| 16 | mouse | 217449 | Trappc12 | trafficking protein particl... | XM_006515059.2 | 41.2% | 45.1% | (many diffs) |
| 17 | mouse | 217449 | Trappc12 | trafficking protein particl... | NM_001161411.1 | 17% | 18.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1203
- ORF length:
- 1137
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT TCGCTTTCTG GGTGAAAAAG CTGCAGCAAA GAGACAAGTC CTAAATGCCG 121 ACTCAGTGGA ACAATCTTTT GTTGGATTGA AACAGCTAAT CAGCTGCAGA AACTGGAGGG 181 CAGCAGTGGA CCTGTGCGGA CGTCTCCTCA CAGCCCACGG CCAGGGCTAC GGCAAGAGCG 241 GGCTGCTCAC CAGCCACACG ACAGATTCAC TGCAGCTCTG GTTTGTCAGG CTGGCACTAC 301 TAGTGAAGTT GGGCCTTTTC CAGAATGCTG AGATGGAATT TGAACCCTTC GGAAATCTTG 361 ATCAGCCAGA TCTTTATTAC GAGTACTACC CGCACGTGTA CCCTGGGCGC AGGGGCTCCA 421 TGGTCCCCTT CTCGATGCGC ATCTTGCACG CGGAGCTTCA GCAGTACCTG GGGAACCCAC 481 AGGAGTCGCT GGATAGACTG CACAAGGTGA AGACTGTCTG CAGCAAGATC CTGGCCAATT 541 TGGAGCAAGG CTTAGCAGAA GACGGCGGCA TGAGCAGCGT GACTCAGGAG GGCAGACAAG 601 CCTCTATCCG GCTGTGGAGG TCACGTCTGG GCCGGGTGAT GTACTCCATG GCAAACTGTC 661 TGCTCCTGAT GAAGGATTAT GTGCTGGCCG TGGAGGCGTA TCATTCGGTT ATCAAGTATT 721 ACCCAGAGCA AGAGCCCCAG CTGCTCAGCG GCATCGGCCG GATTTCCCTG CAGATTGGAG 781 ACATAAAAAC AGCTGAAAAG TATTTTCAAG ACGTTGAGAA AGTAACACAG AAATTAGACG 841 GACTACAGGG TAAAATCATG GTTTTGATGA ACAGCGCGTT CCTTCACCTC GGGCAGAATA 901 ACTTTGCAGA AGCCCACAGG TTCTTCACAG AGATCTTAAG GATGGATCCA AGAAACGCAG 961 TGGCCAACAA CAACGCTGCC GTGTGTCTGC TCTACCTGGG CAAGCTCAAG GACTCCCTGC 1021 GGCAGCTGGA GGCCATGGTC CAGCAGGACC CCAGGCACTA CCTGCACGAG AGCGTGCTCT 1081 TCAACCTGAC CACCATGTAC GAGCTGGAGT CCTCACGGAG CATGCAGAAG AAACAGGCCC 1141 TGCTGGAGGC TGTCGCCGGC AAGGAGGGGG ACAGCTTCAA CACACAGTGC CTCAAGCTGG 1201 CCTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 1261 gcaacgaac