Transcript: Human XR_426956.3

PREDICTED: Homo sapiens trafficking protein particle complex 12 (TRAPPC12), transcript variant X5, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TRAPPC12 (51112)
Length:
2853
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_426956.3
NBCI Gene record:
TRAPPC12 (51112)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_426956.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000417608 ATCATTCGGTTATCAAGTATT pLKO_005 2339 3UTR 100% 13.200 18.480 N TRAPPC12 n/a
2 TRCN0000454928 GCAAAGAGACAAGTCCTAAAT pLKO_005 1735 3UTR 100% 13.200 18.480 N TRAPPC12 n/a
3 TRCN0000136321 CCTGATGAAGGATTATGTGCT pLKO.1 2304 3UTR 100% 2.640 2.112 N TRAPPC12 n/a
4 TRCN0000134971 CAGAATGCTGAGATGGAATTT pLKO.1 1960 3UTR 100% 13.200 9.240 N TRAPPC12 n/a
5 TRCN0000427957 CCTTCACCTCGGGCAGAATAA pLKO_005 2419 3UTR 100% 13.200 9.240 N TRAPPC12 n/a
6 TRCN0000426819 TCTTGATCAGCCAGATCTTTA pLKO_005 1995 3UTR 100% 13.200 9.240 N TRAPPC12 n/a
7 TRCN0000136932 CAGGAGGAAACCATCGATCTT pLKO.1 730 3UTR 100% 4.950 3.465 N TRAPPC12 n/a
8 TRCN0000136810 CCACAGGTTCTTCACAGAGAT pLKO.1 2452 3UTR 100% 4.950 3.465 N TRAPPC12 n/a
9 TRCN0000137130 CTTCAACCTGACCACCATGTA pLKO.1 2617 3UTR 100% 4.950 3.465 N TRAPPC12 n/a
10 TRCN0000137445 GCCTTCATTTCCGTCAGCAAT pLKO.1 1327 3UTR 100% 4.950 3.465 N TRAPPC12 n/a
11 TRCN0000137444 GCCAATTTGGAGCAAGGCTTA pLKO.1 2173 3UTR 100% 4.050 2.835 N TRAPPC12 n/a
12 TRCN0000134866 CTTCACAGAGATCTTAAGGAT pLKO.1 2461 3UTR 100% 3.000 2.100 N TRAPPC12 n/a
13 TRCN0000137171 GCTGAACGAACACATGATGGA pLKO.1 819 3UTR 100% 2.640 1.848 N TRAPPC12 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_426956.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11951 pDONR223 100% 35% None 1_1704del;2409_2410ins101;2741_2853del n/a
2 ccsbBroad304_11951 pLX_304 0% 35% V5 1_1704del;2409_2410ins101;2741_2853del n/a
3 TRCN0000467963 GACTACTTTGTCCTTGACACGCTG pLX_317 37.7% 35% V5 1_1704del;2409_2410ins101;2741_2853del n/a
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