Construct: ORF ccsbBroadEn_11988
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007525.1_s300c1, BRDN0000455431
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GULP1 (51454)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51454 | GULP1 | GULP PTB domain containing ... | XM_017004308.1 | 51% | 33.3% | (many diffs) |
| 2 | human | 51454 | GULP1 | GULP PTB domain containing ... | NM_001252668.1 | 50.1% | 45.5% | (many diffs) |
| 3 | human | 51454 | GULP1 | GULP PTB domain containing ... | NM_016315.4 | 48% | 43.7% | (many diffs) |
| 4 | human | 51454 | GULP1 | GULP PTB domain containing ... | XM_017004306.1 | 48% | 43.7% | (many diffs) |
| 5 | human | 51454 | GULP1 | GULP PTB domain containing ... | XM_011511335.2 | 47.8% | 31.3% | (many diffs) |
| 6 | human | 51454 | GULP1 | GULP PTB domain containing ... | XM_017004307.1 | 47.8% | 31.3% | (many diffs) |
| 7 | human | 51454 | GULP1 | GULP PTB domain containing ... | XM_006712589.3 | 45.4% | 41.3% | (many diffs) |
| 8 | human | 51454 | GULP1 | GULP PTB domain containing ... | XM_017004303.1 | 40.1% | 36.5% | (many diffs) |
| 9 | human | 51454 | GULP1 | GULP PTB domain containing ... | XM_017004304.2 | 40.1% | 36.5% | (many diffs) |
| 10 | human | 51454 | GULP1 | GULP PTB domain containing ... | XM_017004305.1 | 40.1% | 36.5% | (many diffs) |
| 11 | human | 51454 | GULP1 | GULP PTB domain containing ... | XM_011511329.1 | 39.1% | 35.6% | (many diffs) |
| 12 | human | 51454 | GULP1 | GULP PTB domain containing ... | XM_006712580.4 | 38.8% | 35.3% | (many diffs) |
| 13 | human | 51454 | GULP1 | GULP PTB domain containing ... | XM_006712581.1 | 38.8% | 35.3% | (many diffs) |
| 14 | human | 51454 | GULP1 | GULP PTB domain containing ... | XM_006712582.1 | 38.8% | 35.3% | (many diffs) |
| 15 | human | 51454 | GULP1 | GULP PTB domain containing ... | XM_006712583.4 | 38.8% | 35.3% | (many diffs) |
| 16 | human | 51454 | GULP1 | GULP PTB domain containing ... | XM_006712584.4 | 38.8% | 35.3% | (many diffs) |
| 17 | human | 51454 | GULP1 | GULP PTB domain containing ... | XM_006712585.1 | 38.8% | 35.3% | (many diffs) |
| 18 | human | 51454 | GULP1 | GULP PTB domain containing ... | XM_011511331.1 | 34.3% | 28.1% | (many diffs) |
| 19 | human | 51454 | GULP1 | GULP PTB domain containing ... | XM_011511332.2 | 31.6% | 27.7% | (many diffs) |
| 20 | human | 51454 | GULP1 | GULP PTB domain containing ... | NR_045562.2 | 13.6% | (many diffs) | |
| 21 | human | 51454 | GULP1 | GULP PTB domain containing ... | NR_045563.2 | 12.6% | (many diffs) | |
| 22 | human | 51454 | GULP1 | GULP PTB domain containing ... | XR_002959305.1 | 8.2% | (many diffs) | |
| 23 | mouse | 70676 | Gulp1 | GULP, engulfment adaptor PT... | XM_006496278.3 | 48% | 44.9% | (many diffs) |
| 24 | mouse | 70676 | Gulp1 | GULP, engulfment adaptor PT... | XM_006496277.3 | 46.8% | 43.7% | (many diffs) |
| 25 | mouse | 70676 | Gulp1 | GULP, engulfment adaptor PT... | NM_028450.3 | 46% | 43% | (many diffs) |
| 26 | mouse | 70676 | Gulp1 | GULP, engulfment adaptor PT... | XM_006496276.3 | 44.9% | 42% | (many diffs) |
| 27 | mouse | 70676 | Gulp1 | GULP, engulfment adaptor PT... | XM_011238599.2 | 44.9% | 42% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 567
- ORF length:
- 501
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA CCGTGCTTTT AGCAGGAAGA AAGACAAAAC ATGGATGCAT ACACCTGAAG 121 CTTTATCAAA ACATTTCATT CCCTATAATG CAAAGTTTCT TGGCAGTACA GAAGTGGAAC 181 AGCCAAAAGG AACAGAAGTT GTGAGAGATG CTGTAAGGAA ACTAAAGTTT GCAAGACATA 241 TCAAGAAATC TGAAGGCCAG AAAATTCCTA AAGTGGAGTT GCAAATATCA ATTTATGGAG 301 TAAAAATTCT AGAACCCAAA ACAAAGGAAG TTCAACACAA TTGCCAGCTT CATAGAATAT 361 CTTTTTGTGC AGATGATAAA ACTGACAAGA GGATATTCAC TTTCATATGC AAAGATTCTG 421 AGTCAAATAA ACATTTGTGC TATGTATTTG ACAGCGAAAA GTGTGTAAGT ATCCCAGATG 481 TTGTAGGGTG GTTTGTTCTG TTTTATAAGC CAGGAATTGT CTTGCTTCTG GCATTGGCAA 541 AGTATTTGAA AATGAATAAT TTTCTGTACC CAACTTTCTT GTACAAAGTT GGcattataa 601 gaaagcattg cttatcaatt tgttgcaacg aac