Transcript: Human XM_006712585.1

PREDICTED: Homo sapiens GULP PTB domain containing engulfment adaptor 1 (GULP1), transcript variant X7, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
GULP1 (51454)
Length:
3193
CDS:
139..1278

Additional Resources:

NCBI RefSeq record:
XM_006712585.1
NBCI Gene record:
GULP1 (51454)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006712585.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000029058 GCAAAGATTCTGAGTCAAATA pLKO.1 482 CDS 100% 13.200 18.480 N GULP1 n/a
2 TRCN0000230096 CAGTATCTACTACCCATATTT pLKO_005 2097 3UTR 100% 15.000 10.500 N GULP1 n/a
3 TRCN0000218935 ACTCTTGAAGGCACAGTATTT pLKO_005 1228 CDS 100% 13.200 9.240 N GULP1 n/a
4 TRCN0000445519 AGAGGATATTCACTTTCATAT pLKO_005 461 CDS 100% 13.200 9.240 N Gulp1 n/a
5 TRCN0000230093 TGCATACACCTGAAGCTTTAT pLKO_005 179 CDS 100% 13.200 9.240 N GULP1 n/a
6 TRCN0000230095 TGTGCTGAAGAGATCACTTTA pLKO_005 535 CDS 100% 13.200 9.240 N GULP1 n/a
7 TRCN0000230094 TCCTAAAGTGGAGTTGCAAAT pLKO_005 339 CDS 100% 10.800 7.560 N GULP1 n/a
8 TRCN0000029054 CCAGCTTCATAGAATATCTTT pLKO.1 417 CDS 100% 5.625 3.938 N GULP1 n/a
9 TRCN0000029057 CTAACTCTTGAAGGCACAGTA pLKO.1 1225 CDS 100% 4.950 3.465 N GULP1 n/a
10 TRCN0000029056 CTCCAATATCACACCAGTCTT pLKO.1 1031 CDS 100% 4.950 3.465 N GULP1 n/a
11 TRCN0000029055 GCTATGTATTTGACAGCGAAA pLKO.1 512 CDS 100% 4.050 2.835 N GULP1 n/a
12 TRCN0000101262 GCCAGCTTCATAGAATATCAT pLKO.1 416 CDS 100% 5.625 3.938 N Gulp1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006712585.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11988 pDONR223 100% 38.8% 35.3% None (many diffs) n/a
2 ccsbBroad304_11988 pLX_304 0% 38.8% 35.3% V5 (many diffs) n/a
3 TRCN0000480156 CGGCCTGGATCGGAATGTCCCTAA pLX_317 79.8% 38.8% 35.3% V5 (many diffs) n/a
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