Construct: ORF ccsbBroadEn_12087

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014272.1_s300c1, BRDN0000390068
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
AFTPH (54812)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54812 AFTPH aftiphilin NM_001002243.3 15.1% 15% 1_2253del;2597A>G;2668_2724del
2 human 54812 AFTPH aftiphilin NM_017657.5 15.1% 15% (many diffs)
3 human 54812 AFTPH aftiphilin NM_203437.3 14.7% 14.6% (many diffs)
4 human 54812 AFTPH aftiphilin XM_005264380.2 14.6% 14.6% (many diffs)
5 human 54812 AFTPH aftiphilin XR_244941.4 8.7% (many diffs)
6 human 54812 AFTPH aftiphilin XR_244940.4 8.7% (many diffs)
7 mouse 216549 Aftph aftiphilin NM_181411.4 13.7% 13.8% (many diffs)
8 mouse 216549 Aftph aftiphilin NM_001290545.1 13.3% 13.4% (many diffs)
9 mouse 216549 Aftph aftiphilin XM_006514625.3 12.8% 13% (many diffs)
10 mouse 216549 Aftph aftiphilin NM_001252503.2 7.6% 7.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
480
ORF length:
414
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTA TGCAGCAGGA TTGGGTATGT TAGAGCCCAC CAAGGAACCA CTGAAACCAC
121TTTCTGCTGC AGAAAAAATA GCTTCCATCG GTCAGACAGC CACCATGTCA CCAGATATGA
181ACACATGTAC ATCTGATCAG TTCCAGGAGT CTCTACCACC CGTCCAGTTT GACTGGAGTA
241GCAGTGGCCT TACTAACCCT TTAGATGGTG TGGATCCGGA GTTGTATGAG TTAACAACTT
301CTAAGCTGGA AATCTCCACC TCAAGCCTCA AAGTGACTGA TGCATTTGCA AGACTCATGT
361CTACAGTAGA GAAGACAAGC ACATCTACCA GGAAACCGAA AAGAGAAGGG CACCTAAGTG
421AAGAAGCTAT CAAGGTGATC GCTGGCCTTC CTGACTTAAC ATTCATGCAT GCCAAGGTGT
481GCCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca
541acgaac

Download FASTA (ORF) (Full)