Construct: ORF ccsbBroadEn_12092
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010378.1_s300c1, BRDN0000388401
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BCAS3 (54828)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | XM_024450813.1 | 57% | 57% | 1_882del |
2 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | XM_017024796.1 | 55.7% | 55.7% | 1_882del;950_994del |
3 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | NM_017679.5 | 42.7% | 42.7% | 1_1569del |
4 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | NM_001099432.3 | 42% | 42% | 1_1569del;1637_1681del |
5 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | NM_001330414.2 | 41.7% | 41.7% | 1_1569del;2593_2658del |
6 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | NM_001353145.2 | 41.3% | 41.3% | 1_1659del |
7 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | NM_001330413.2 | 41% | 41% | 1_1569del;1637_1681del;2638_2703del |
8 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | NM_001353144.2 | 40.7% | 40.7% | 1_1659del;1727_1771del |
9 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | XM_011524943.3 | 40.4% | 40.4% | 1_1659del;2683_2748del |
10 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | XM_011524942.3 | 39.7% | 39.7% | 1_1659del;1727_1771del;2728_2793del |
11 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | XM_017024788.2 | 38.8% | 38.7% | 1_1659del;1727_1771del;2561_2701del |
12 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | NM_001320470.3 | 38.7% | 35.6% | (many diffs) |
13 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | XM_017024790.2 | 38.1% | 35.1% | (many diffs) |
14 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | XM_017024787.2 | 37.9% | 37.8% | (many diffs) |
15 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | XM_011524941.2 | 37.9% | 37.9% | 1_1569del;2424_2702del;2872_2937del |
16 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | XM_017024786.2 | 37.3% | 37.3% | (many diffs) |
17 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | XM_017024793.2 | 37.3% | 37.3% | 1_1569del;2592_2682del;2718_2719ins112 |
18 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | XM_017024784.2 | 37.1% | 37.1% | 1_1659del;1727_1771del;2559_2837del |
19 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | XM_011524940.2 | 36.8% | 36.8% | 1_1659del;2514_2792del;2962_3027del |
20 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | NM_001353146.2 | 36.8% | 36.7% | (many diffs) |
21 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | XM_011524939.2 | 36.3% | 36.3% | (many diffs) |
22 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | XM_017024789.2 | 35.6% | 35.6% | (many diffs) |
23 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | XM_017024783.2 | 33.8% | 31.1% | (many diffs) |
24 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | XM_017024785.2 | 32.6% | 32.5% | (many diffs) |
25 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | XM_024450812.1 | 31.7% | 31.3% | (many diffs) |
26 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | XM_017024795.2 | 31.3% | 30.9% | (many diffs) |
27 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | XM_011524946.3 | 30.3% | 29.9% | (many diffs) |
28 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | XM_011524947.2 | 30.3% | 30.1% | (many diffs) |
29 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | XM_011524948.3 | 30.2% | 29.8% | (many diffs) |
30 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | XM_011524949.3 | 30.1% | 30% | (many diffs) |
31 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | XM_011524950.2 | 30% | 29.8% | (many diffs) |
32 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | XM_011524951.3 | 29.9% | 29.8% | (many diffs) |
33 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | XM_017024794.2 | 29.9% | 29.7% | (many diffs) |
34 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | XR_001752547.2 | 20.9% | (many diffs) | |
35 | human | 54828 | BCAS3 | BCAS3 microtubule associate... | XR_934493.3 | 17.6% | (many diffs) | |
36 | mouse | 192197 | Bcas3 | breast carcinoma amplified ... | NM_001166642.1 | 37.8% | 40.8% | (many diffs) |
37 | mouse | 192197 | Bcas3 | breast carcinoma amplified ... | NM_001166643.1 | 37.8% | 40.8% | (many diffs) |
38 | mouse | 192197 | Bcas3 | breast carcinoma amplified ... | XM_006532541.2 | 37.8% | 40.8% | (many diffs) |
39 | mouse | 192197 | Bcas3 | breast carcinoma amplified ... | XM_017314343.1 | 37.2% | 40.2% | (many diffs) |
40 | mouse | 192197 | Bcas3 | breast carcinoma amplified ... | NM_138681.4 | 37.1% | 40.1% | (many diffs) |
41 | mouse | 192197 | Bcas3 | breast carcinoma amplified ... | XM_006532540.2 | 37.1% | 40.1% | (many diffs) |
42 | mouse | 192197 | Bcas3 | breast carcinoma amplified ... | XM_006532538.2 | 36.6% | 39.6% | (many diffs) |
43 | mouse | 192197 | Bcas3 | breast carcinoma amplified ... | XM_006532536.3 | 35.8% | 38.7% | (many diffs) |
44 | mouse | 192197 | Bcas3 | breast carcinoma amplified ... | XM_017314342.1 | 34.3% | 35% | (many diffs) |
45 | mouse | 192197 | Bcas3 | breast carcinoma amplified ... | XM_006532537.3 | 33.3% | 34% | (many diffs) |
46 | mouse | 192197 | Bcas3 | breast carcinoma amplified ... | XM_006532539.3 | 32% | 34.4% | (many diffs) |
47 | mouse | 192197 | Bcas3 | breast carcinoma amplified ... | XM_011248810.2 | 27.5% | 29% | (many diffs) |
48 | mouse | 192197 | Bcas3 | breast carcinoma amplified ... | XM_006532542.3 | 26.3% | 28.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1236
- ORF length:
- 1170
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACATAAAAG 61 TTGTCATGGT AGTGATGCCT CTTGCACAAA TCAAGCAGCC AATGACATTG GGGACCATCA 121 CCAAACGAAC CGGCAAAGTT AAACCTCCTC CACAAATTTC ACCCAGCAAA TCGATGGGCG 181 GAGAATTTTG TGTGGCTGCT ATCTTCGGAA CATCCAGGTC ATGGTTTGCA AATAATGCAG 241 GTCTGAAAAG AGAAAAAGAT CAGTCCAAAC AAGTTGTAGT TGAGTCCCTG TACATTATCA 301 GTTGCTATGG CACCTTAGTG GAACACATGA TGGAGCCGCG ACCCCTCAGC ACTGCACCCA 361 AGATTAGTGA CGACACACCA CTGGAAATGA TGACATCGCC TCGAGCCAGC TGGACTCTGG 421 TTAGAACCCC TCAATGGAAT GAATTGCAGC CACCGTTTAA TGCAAACCAC CCTCTGCTCC 481 TCGCTGCAGA TGCAGTACAG TATTATCAGT TCCTGCTTGC TGGCCTGGTT CCCCCTGGAA 541 GTCCTGGGCC CATTACTCGA CATGGGTCTT ACGACAGTTT AGCTTCTGAC CATAGTGGAC 601 AGGAAGATGA AGAATGGCTT TCCCAGGTTG AAATTGTAAC ACACACTGGA CCCCATAGAC 661 GTCTGTGGAT GGGTCCACAG TTCCAGTTCA AAACCATCCA TCCCTCAGGC CAAACCACAG 721 TTATCTCATC CAGTTCATCT GTGTTGCAGT CTCATGGTCC GAGTGACACG CCACAGCCTC 781 TTTTGGATTT TGATACAGAT GATCTTGATC TCAACAGTCT CAGGATCCAG CCAGTCCGCT 841 CTGACCCCGT CAGCATGCCA GGGTCATCCC GTCCAGTCTC TGATCGAAGG GGAGTTTCCA 901 CAGTGATTGA TGCTGCCTCA GGTACCTTTG ACAGGAGCGT GACCCTGCTG GAGGTGTGCG 961 GGAGCTGGCC TGAGGGCTTC GGGCTGCGGC ACATGTCCTC CATGGAGCAC ACGGAGGAGG 1021 GCCTCCGGGA GCGACTTGCC GACGCCATGG CCGAGTCACC TAGCCGGGAC GTCGTGGGAT 1081 CCGGAACAGA ACTTCAGCGA GAGGGAAGCA TCGAGACTCT GAGTAACAGC TCAGGCTCCA 1141 CCAGCGGCAG CATACCAAGA AACTTTGATG GCTACCGATC TCCGCTGCCC ACCAATGAGA 1201 GCCAGCCCCT CAGCCTCTTC CCGACTGGCT TCCCGTACCC AACTTTCTTG TACAAAGTtg 1261 gcattataag aaagcattgc ttatcaattt gttgcaacga ac