Construct: ORF ccsbBroadEn_12168

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016526.1_s300c1, BRDN0000389191
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RBM23 (55147)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55147 RBM23 RNA binding motif protein 23 NM_001352765.2 99.6% 99.7% 360G>A;546C>T;1119_1120insGCC
2 human 55147 RBM23 RNA binding motif protein 23 NM_018107.5 99.6% 99.7% 360G>A;546C>T;1119_1120insGCC
3 human 55147 RBM23 RNA binding motif protein 23 XM_024449643.1 99.6% 99.7% 360G>A;546C>T;1119_1120insGCC
4 human 55147 RBM23 RNA binding motif protein 23 NM_001077351.2 95.9% 95.9% (many diffs)
5 human 55147 RBM23 RNA binding motif protein 23 NM_001352763.2 95.9% 95.9% (many diffs)
6 human 55147 RBM23 RNA binding motif protein 23 NM_001352766.2 95.9% 95.9% (many diffs)
7 human 55147 RBM23 RNA binding motif protein 23 XM_011536897.2 95.5% 95.7% (many diffs)
8 human 55147 RBM23 RNA binding motif protein 23 NM_001077352.2 95.4% 95.5% 352_353ins54;492C>T;1065_1066insGCC
9 human 55147 RBM23 RNA binding motif protein 23 XM_017021410.1 95.4% 95.5% 352_353ins54;492C>T;1065_1066insGCC
10 human 55147 RBM23 RNA binding motif protein 23 XM_024449642.1 93.6% 93.7% (many diffs)
11 human 55147 RBM23 RNA binding motif protein 23 XM_017021403.2 92.6% 92.7% (many diffs)
12 human 55147 RBM23 RNA binding motif protein 23 XM_017021404.1 92.6% 92.7% (many diffs)
13 human 55147 RBM23 RNA binding motif protein 23 XM_017021406.1 92.2% 92.1% (many diffs)
14 human 55147 RBM23 RNA binding motif protein 23 XM_011536900.2 91.9% 91.8% (many diffs)
15 human 55147 RBM23 RNA binding motif protein 23 XM_017021411.1 91.5% 91.6% (many diffs)
16 human 55147 RBM23 RNA binding motif protein 23 XM_011536892.2 90.2% 90.3% (many diffs)
17 human 55147 RBM23 RNA binding motif protein 23 XM_011536893.3 90.2% 90.3% (many diffs)
18 human 55147 RBM23 RNA binding motif protein 23 XM_017021401.2 89.4% 89.4% (many diffs)
19 human 55147 RBM23 RNA binding motif protein 23 XM_017021402.2 89.4% 89.4% (many diffs)
20 human 55147 RBM23 RNA binding motif protein 23 XM_017021400.2 89% 89.2% (many diffs)
21 human 55147 RBM23 RNA binding motif protein 23 XM_017021408.1 88.7% 88.8% (many diffs)
22 human 55147 RBM23 RNA binding motif protein 23 XM_017021409.1 88.3% 88.2% (many diffs)
23 human 55147 RBM23 RNA binding motif protein 23 NM_001352764.2 87.2% 87.1% (many diffs)
24 human 55147 RBM23 RNA binding motif protein 23 XM_011536895.3 86.4% 86.5% (many diffs)
25 human 55147 RBM23 RNA binding motif protein 23 XM_011536896.3 86.4% 86.5% (many diffs)
26 human 55147 RBM23 RNA binding motif protein 23 XM_017021405.2 85.7% 85.5% (many diffs)
27 human 55147 RBM23 RNA binding motif protein 23 XM_017021398.2 84.4% 84.6% (many diffs)
28 human 55147 RBM23 RNA binding motif protein 23 XM_011536894.2 83.6% 83.4% (many diffs)
29 human 55147 RBM23 RNA binding motif protein 23 XM_024449640.1 81.8% 81.7% (many diffs)
30 human 55147 RBM23 RNA binding motif protein 23 XM_017021399.2 80.9% 81% (many diffs)
31 human 55147 RBM23 RNA binding motif protein 23 XM_024449641.1 78.4% 78.2% (many diffs)
32 human 55147 RBM23 RNA binding motif protein 23 XM_024449646.1 69.7% 69.1% (many diffs)
33 human 55147 RBM23 RNA binding motif protein 23 XM_024449645.1 64.8% 64.2% (many diffs)
34 human 55147 RBM23 RNA binding motif protein 23 NM_001308044.2 63.3% 63.4% 0_1ins462;84C>T;657_658insGCC
35 human 55147 RBM23 RNA binding motif protein 23 NM_001352762.2 63.3% 63.4% 0_1ins462;84C>T;657_658insGCC
36 human 55147 RBM23 RNA binding motif protein 23 XM_011536902.1 63.3% 63.4% 0_1ins462;84C>T;657_658insGCC
37 human 55147 RBM23 RNA binding motif protein 23 XM_011536903.1 63.3% 63.4% 0_1ins462;84C>T;657_658insGCC
38 human 55147 RBM23 RNA binding motif protein 23 XM_011536904.1 63.3% 63.4% 0_1ins462;84C>T;657_658insGCC
39 human 55147 RBM23 RNA binding motif protein 23 XM_011536905.1 63.3% 63.4% 0_1ins462;84C>T;657_658insGCC
40 human 55147 RBM23 RNA binding motif protein 23 XM_011536906.1 63.3% 63.4% 0_1ins462;84C>T;657_658insGCC
41 human 55147 RBM23 RNA binding motif protein 23 XM_017021420.1 63.3% 63.4% 0_1ins462;84C>T;657_658insGCC
42 human 55147 RBM23 RNA binding motif protein 23 XM_024449644.1 61.4% 61.1% (many diffs)
43 human 55147 RBM23 RNA binding motif protein 23 XM_017021414.1 58.9% 58.9% (many diffs)
44 human 55147 RBM23 RNA binding motif protein 23 XM_017021415.1 58.9% 58.9% (many diffs)
45 human 55147 RBM23 RNA binding motif protein 23 XM_017021416.1 58.9% 58.9% (many diffs)
46 human 55147 RBM23 RNA binding motif protein 23 XM_017021417.1 58.9% 58.9% (many diffs)
47 human 55147 RBM23 RNA binding motif protein 23 XM_017021418.1 58.9% 58.9% (many diffs)
48 human 55147 RBM23 RNA binding motif protein 23 XM_017021419.1 58.9% 58.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1338
ORF length:
1272
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC ATCTGATGAC TTTGACATAG TGATTGAGGC CATGCTGGAA GCTCCCTATA
121AAAAAGAAGA GGATGAGCAA CAAAGGAAAG AAGTTAAAAA GGATTATCCT AGCAATACCA
181CCAGCAGCAC CAGCAACAGT GGCAATGAGA CCAGTGGAAG CAGCACCATC GGGGAGACAA
241GCAATCGTAG TCGAGATCGG GATCGGTATA GACGGAGAAA TAGTCGGAGC CGAAGTCCAG
301GTCGGCAGTG TCGTCACCGT AGCCGTAGCT GGGATCGTCG ACATGGTAGT GAGTCGCGAA
361GTCGGGACCA TCGTCGTGAG GATCGTGTGC ATTACAGGAG TCCTCCACTT GCCACTGGTT
421ATAGATATGG ACACAGTAAG AGTCCTCATT TCAGAGAGAA GAGCCCAGTC AGGGAGCCAG
481TTGATAATCT GAGTCCTGAG GAGCGTGATG CCCGCACAGT TTTCTGTATG CAGTTAGCTG
541CCCGAATTCG GCCTCGAGAT CTGGAGGACT TTTTCTCTGC TGTAGGCAAG GTTCGCGATG
601TACGTATCAT TTCAGATCGG AACTCACGTC GTTCTAAGGG CATTGCCTAC GTGGAATTCT
661GTGAAATCCA GTCTGTGCCA CTGGCCATTG GGCTGACTGG GCAGCGGTTG CTGGGAGTGC
721CTATCATTGT ACAGGCTTCA CAGGCAGAGA AAAACCGACT GGCAGCCATG GCCAACAACC
781TGCAAAAGGG CAATGGTGGA CCAATGCGCC TCTATGTGGG TTCCCTGCAC TTCAATATCA
841CTGAAGACAT GCTCCGGGGC ATCTTTGAGC CCTTTGGTAA AATTGATAAT ATTGTCCTGA
901TGAAGGACTC AGATACAGGC CGCTCTAAAG GTTATGGTTT CATCACGTTC TCTGATTCTG
961AGTGTGCCCG GCGGGCCCTG GAACAGTTGA ATGGGTTTGA GCTTGCTGGT CGACCTATGA
1021GGGTTGGCCA TGTGACTGAG CGACTGGATG GTGGCACAGA CATCACTTTT CCTGATGGGG
1081ACCAGGAGCT GGATCTGGGA TCAGCAGGTG GACGTTTTCA GCTCATGGCA AAACTGGCAG
1141AAGGCGCTGG AATCCAACTG CCAAGCACTG CTGCTGCTGC TGCTGCCGCC GCCGCCGCCC
1201AGGCTGCTGC CTTGCAACTG AATGGAGCAG TTCCCTTGGG GGCCCTGAAT CCAGCAGCTC
1261TGACTGCTCT GAGTCCAGCC CTGAACCTTG CCTCCCAGTG TTTCCAGCTC TCCAGCCTCT
1321TTACCCCCCA GACCATGTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
1381gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)