Transcript: Human NM_001308044.2

Homo sapiens RNA binding motif protein 23 (RBM23), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-05-31
Taxon:
Homo sapiens (human)
Gene:
RBM23 (55147)
Length:
9846
CDS:
511..1320

Additional Resources:

NCBI RefSeq record:
NM_001308044.2
NBCI Gene record:
RBM23 (55147)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001308044.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000236392 CTCCACTTGCCACTGGTTATA pLKO_005 386 5UTR 100% 13.200 18.480 N RBM23 n/a
2 TRCN0000236394 GATCGGTATAGACGGAGAAAT pLKO_005 244 5UTR 100% 13.200 18.480 N RBM23 n/a
3 TRCN0000236390 TCAGATACAGGCCGCTCTAAA pLKO_005 892 CDS 100% 13.200 18.480 N RBM23 n/a
4 TRCN0000236393 ATGCTGGAAGCTCCCTATAAA pLKO_005 198 5UTR 100% 15.000 10.500 N RBM23 n/a
5 TRCN0000236391 GCCTCAACCCTGGCAATTATA pLKO_005 2148 3UTR 100% 15.000 10.500 N RBM23 n/a
6 TRCN0000148528 CCACCCTTAAGATACCAAGAA pLKO.1 1457 3UTR 100% 4.950 3.465 N RBM23 n/a
7 TRCN0000150168 CTTTCCAGTATCTTCCATCTT pLKO.1 2026 3UTR 100% 4.950 3.465 N RBM23 n/a
8 TRCN0000149951 GACACAGTAAGAGTCCTCATT pLKO.1 413 5UTR 100% 4.950 3.465 N RBM23 n/a
9 TRCN0000148856 CCAGTTGATAATCTGAGTCCT pLKO.1 460 5UTR 100% 2.640 1.848 N RBM23 n/a
10 TRCN0000146616 CTGCACTTCAATATCACTGAA pLKO.1 808 CDS 100% 4.950 2.970 N RBM23 n/a
11 TRCN0000072628 CCTCCCAAAGTGCTAGGATTA pLKO.1 7498 3UTR 100% 10.800 5.400 Y MRPS16 n/a
12 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 3394 3UTR 100% 4.950 2.475 Y ERAP2 n/a
13 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 3395 3UTR 100% 13.200 6.600 Y LIAS n/a
14 TRCN0000140657 CCTCCCAAAGTGCTAGGATAA pLKO.1 7498 3UTR 100% 10.800 5.400 Y CD3EAP n/a
15 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 7930 3UTR 100% 5.625 2.813 Y KLHL30 n/a
16 TRCN0000264189 CAAGTAGCTGGGACTACAGGA pLKO_005 8117 3UTR 100% 2.640 1.320 Y LINC01098 n/a
17 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 7930 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001308044.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12168 pDONR223 100% 63.3% 63.4% None 0_1ins462;84C>T;657_658insGCC n/a
2 ccsbBroad304_12168 pLX_304 0% 63.3% 63.4% V5 0_1ins462;84C>T;657_658insGCC n/a
3 TRCN0000468308 GTCGAATCCCAGATCACAGTTCAA pLX_317 34.9% 63.3% 63.4% V5 0_1ins462;84C>T;657_658insGCC n/a
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