Construct: ORF ccsbBroadEn_12190
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005395.1_s300c1, BRDN0000388129
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- UQCC1 (55245)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55245 | UQCC1 | ubiquinol-cytochrome c redu... | XM_011528882.2 | 87.5% | 87.7% | 0_1ins68;2_3delTG |
| 2 | human | 55245 | UQCC1 | ubiquinol-cytochrome c redu... | XM_011528883.2 | 87.5% | 87.7% | 0_1ins68;2_3delTG |
| 3 | human | 55245 | UQCC1 | ubiquinol-cytochrome c redu... | XM_011528884.2 | 87.5% | 87.7% | 0_1ins68;2_3delTG |
| 4 | human | 55245 | UQCC1 | ubiquinol-cytochrome c redu... | XM_011528881.3 | 84.7% | 81.4% | (many diffs) |
| 5 | human | 55245 | UQCC1 | ubiquinol-cytochrome c redu... | NM_001184977.1 | 80.9% | 70.7% | 1_59del;130_202del |
| 6 | human | 55245 | UQCC1 | ubiquinol-cytochrome c redu... | XM_011528878.2 | 70% | 61.3% | 1_59del;130_310del |
| 7 | human | 55245 | UQCC1 | ubiquinol-cytochrome c redu... | XM_011528879.1 | 69.2% | 64.7% | (many diffs) |
| 8 | human | 55245 | UQCC1 | ubiquinol-cytochrome c redu... | XM_011528880.2 | 69.2% | 64.7% | (many diffs) |
| 9 | human | 55245 | UQCC1 | ubiquinol-cytochrome c redu... | NM_018244.5 | 62.5% | 54.9% | 1_59del;130_406del |
| 10 | human | 55245 | UQCC1 | ubiquinol-cytochrome c redu... | XM_011528877.1 | 59.7% | 52.5% | 1_59del;130_448del |
| 11 | human | 55245 | UQCC1 | ubiquinol-cytochrome c redu... | NM_199487.2 | 53.8% | 46.3% | 1_59del;130_406del;572_573ins78 |
| 12 | mouse | 56046 | Uqcc1 | ubiquinol-cytochrome c redu... | NM_018888.4 | 56.4% | 52.3% | (many diffs) |
| 13 | mouse | 56046 | Uqcc1 | ubiquinol-cytochrome c redu... | XM_011239704.2 | 52.9% | 49% | (many diffs) |
| 14 | mouse | 56046 | Uqcc1 | ubiquinol-cytochrome c redu... | NR_024487.2 | 18.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 627
- ORF length:
- 561
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCA GCCGATTGAT ACCTGTGTCT CCTACCCAAG GACAGGGGGA CAGGGCTCTG 121 TCTCGCACTT CCCAGGGTGT CAGATGCCTG ATACATTCAA TTCATGGTTT CTTATAACCC 181 TACTCCACGT CTGGATGTGT CTAGTCCGAA TGAAGCAGGA AGGCCGGAGT GGGAAGTACA 241 TGTGTCGTAT CATAGTTCAT TTTATGTGGG AGGATGTTCA GCAGCGCGGC AGAGTCATGG 301 GGGTTAATCC CTATATCCTG AAGAAGAACA TGATCCTCAT GACAAATCAT TTCTATGCAG 361 CGATCTTGGG ATATGATGAG GGGATCCTTT CAGATGATCA TGGGCTGGCC GCTGCCCTCT 421 GGAGAACCTT CTTCAACCGG AAATGTGAAG ACCCTCGACA TCTTGAATTG CTGGTAGAGT 481 ATGTGAGGAA ACAGATACAG TACCTGGACT CCATGAACGG GGAGGATCTG CTTCTGACAG 541 GGGAGGTGAG CTGGCGCCCT CTAGTGGAGA AGAATCCTCA GAGCATCCTG AAGCCCCATT 601 CTCCGACTTA CAACGACGAG GGACTTTGCC CAACTTTCTT GTACAAAGTt ggcattataa 661 gaaagcattg cttatcaatt tgttgcaacg aac