Transcript: Mouse NM_018888.4

Mus musculus ubiquinol-cytochrome c reductase complex assembly factor 1 (Uqcc1), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Uqcc1 (56046)
Length:
2668
CDS:
275..1162

Additional Resources:

NCBI RefSeq record:
NM_018888.4
NBCI Gene record:
Uqcc1 (56046)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_018888.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000217457 GCCGCCTTCTCAGTTTATTTA pLKO.1 2443 3UTR 100% 15.000 21.000 N Uqcc1 n/a
2 TRCN0000200583 CCGGATCATAGTTCATTTCAT pLKO.1 778 CDS 100% 5.625 7.875 N Uqcc1 n/a
3 TRCN0000189674 GCAGCAATCTTGGGATACGAT pLKO.1 890 CDS 100% 3.000 4.200 N Uqcc1 n/a
4 TRCN0000328955 GCAGCAATCTTGGGATACGAT pLKO_005 890 CDS 100% 3.000 4.200 N Uqcc1 n/a
5 TRCN0000192391 CGATACATTCAACTCCTGGTT pLKO.1 682 CDS 100% 2.640 3.696 N Uqcc1 n/a
6 TRCN0000328953 CGATACATTCAACTCCTGGTT pLKO_005 682 CDS 100% 2.640 3.696 N Uqcc1 n/a
7 TRCN0000216729 GTGAGGAAACAGATGCAATAC pLKO.1 1016 CDS 100% 10.800 8.640 N Uqcc1 n/a
8 TRCN0000375147 TGTGCTTGGAGCAGTTTATTA pLKO_005 1495 3UTR 100% 15.000 10.500 N Uqcc1 n/a
9 TRCN0000200524 CCTTCATTGAACTTGCTATAA pLKO.1 2354 3UTR 100% 13.200 9.240 N Uqcc1 n/a
10 TRCN0000200760 GTTCATTTCATGTGGGAAGAT pLKO.1 788 CDS 100% 4.950 3.465 N Uqcc1 n/a
11 TRCN0000328887 GTTCATTTCATGTGGGAAGAT pLKO_005 788 CDS 100% 4.950 3.465 N Uqcc1 n/a
12 TRCN0000202241 GAAGACTGACTTCGAGGAGTT pLKO.1 640 CDS 100% 4.050 2.835 N Uqcc1 n/a
13 TRCN0000148979 GATGTGTCTAGTCCGAATGAA pLKO.1 727 CDS 100% 5.625 3.375 N UQCC1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_018888.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08495 pDONR223 100% 87% 87.2% None (many diffs) n/a
2 ccsbBroad304_08495 pLX_304 0% 87% 87.2% V5 (many diffs) n/a
3 TRCN0000480068 AGGCTCTTTTCCCGTCTAAGCATA pLX_317 19.1% 87% 87.2% V5 (many diffs) n/a
4 ccsbBroadEn_12190 pDONR223 100% 56.4% 52.3% None (many diffs) n/a
5 ccsbBroad304_12190 pLX_304 0% 56.4% 52.3% V5 (many diffs) n/a
6 TRCN0000471610 TAACATAAATCCCCGACTCTAGGC pLX_317 64.7% 56.4% 52.3% V5 (many diffs) n/a
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