Transcript: Human XM_011528884.2

PREDICTED: Homo sapiens ubiquinol-cytochrome c reductase complex assembly factor 1 (UQCC1), transcript variant X8, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
UQCC1 (55245)
Length:
1892
CDS:
244..741

Additional Resources:

NCBI RefSeq record:
XM_011528884.2
NBCI Gene record:
UQCC1 (55245)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011528884.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000148979 GATGTGTCTAGTCCGAATGAA pLKO.1 306 CDS 100% 5.625 7.875 N UQCC1 n/a
2 TRCN0000232944 GTGTCGTATCATAGTTCATTT pLKO_005 354 CDS 100% 13.200 9.240 N UQCC1 n/a
3 TRCN0000232945 GAACCTTCTTCAACCGGAAAT pLKO_005 536 CDS 100% 10.800 7.560 N UQCC1 n/a
4 TRCN0000148028 GAGTATGTGAGGAAACAGATA pLKO.1 589 CDS 100% 4.950 3.465 N UQCC1 n/a
5 TRCN0000146460 CCTTCTTTATTCCAGGGACTT pLKO.1 1230 3UTR 100% 4.050 2.835 N UQCC1 n/a
6 TRCN0000148671 CGACATCTTGAATTGCTGGTA pLKO.1 568 CDS 100% 2.640 1.848 N UQCC1 n/a
7 TRCN0000149717 GATTGATACCTGTGTCTCCTA pLKO.1 78 5UTR 100% 2.640 1.848 N UQCC1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011528884.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12190 pDONR223 100% 87.5% 87.7% None 0_1ins68;2_3delTG n/a
2 ccsbBroad304_12190 pLX_304 0% 87.5% 87.7% V5 0_1ins68;2_3delTG n/a
3 TRCN0000471610 TAACATAAATCCCCGACTCTAGGC pLX_317 64.7% 87.5% 87.7% V5 0_1ins68;2_3delTG n/a
4 ccsbBroadEn_08495 pDONR223 100% 54.6% 54.5% None 0_1ins405;2_4delTGG n/a
5 ccsbBroad304_08495 pLX_304 0% 54.6% 54.5% V5 0_1ins405;2_4delTGG n/a
6 TRCN0000480068 AGGCTCTTTTCCCGTCTAAGCATA pLX_317 19.1% 54.6% 54.5% V5 0_1ins405;2_4delTGG n/a
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