Construct: ORF ccsbBroadEn_12202
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003993.1_s300c1, BRDN0000389156
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC91 (55297)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55297 | CCDC91 | coiled-coil domain containi... | NM_001352086.2 | 99.9% | 99.7% | 850G>A |
| 2 | human | 55297 | CCDC91 | coiled-coil domain containi... | XM_005253415.1 | 99.9% | 99.7% | 850G>A |
| 3 | human | 55297 | CCDC91 | coiled-coil domain containi... | XM_017019574.2 | 99.9% | 99.7% | 850G>A |
| 4 | human | 55297 | CCDC91 | coiled-coil domain containi... | XM_024449039.1 | 99.9% | 99.7% | 850G>A |
| 5 | human | 55297 | CCDC91 | coiled-coil domain containi... | XM_024449035.1 | 97.7% | 97.5% | 150_151ins27;823G>A |
| 6 | human | 55297 | CCDC91 | coiled-coil domain containi... | NM_001352078.2 | 92.2% | 91.6% | (many diffs) |
| 7 | human | 55297 | CCDC91 | coiled-coil domain containi... | NM_001352079.2 | 92.2% | 91.6% | (many diffs) |
| 8 | human | 55297 | CCDC91 | coiled-coil domain containi... | NM_001352080.2 | 92.2% | 91.6% | (many diffs) |
| 9 | human | 55297 | CCDC91 | coiled-coil domain containi... | NM_001352081.2 | 92.2% | 91.6% | (many diffs) |
| 10 | human | 55297 | CCDC91 | coiled-coil domain containi... | NM_018318.5 | 92.2% | 91.6% | (many diffs) |
| 11 | human | 55297 | CCDC91 | coiled-coil domain containi... | XM_005253414.1 | 92.2% | 91.6% | (many diffs) |
| 12 | human | 55297 | CCDC91 | coiled-coil domain containi... | XM_006719104.3 | 92.2% | 91.6% | (many diffs) |
| 13 | human | 55297 | CCDC91 | coiled-coil domain containi... | XM_017019569.1 | 92.2% | 91.6% | (many diffs) |
| 14 | human | 55297 | CCDC91 | coiled-coil domain containi... | XM_024449032.1 | 92.2% | 91.6% | (many diffs) |
| 15 | human | 55297 | CCDC91 | coiled-coil domain containi... | XM_024449033.1 | 92.2% | 91.6% | (many diffs) |
| 16 | human | 55297 | CCDC91 | coiled-coil domain containi... | XM_024449034.1 | 92.2% | 91.6% | (many diffs) |
| 17 | human | 55297 | CCDC91 | coiled-coil domain containi... | XM_024449038.1 | 91.1% | 90.9% | 562_563ins108;742G>A |
| 18 | human | 55297 | CCDC91 | coiled-coil domain containi... | NM_001352082.2 | 90.2% | 89.5% | (many diffs) |
| 19 | human | 55297 | CCDC91 | coiled-coil domain containi... | NM_001352083.2 | 90.2% | 89.5% | (many diffs) |
| 20 | human | 55297 | CCDC91 | coiled-coil domain containi... | XM_017019572.1 | 90.2% | 89.5% | (many diffs) |
| 21 | human | 55297 | CCDC91 | coiled-coil domain containi... | XM_024449036.1 | 90.2% | 89.5% | (many diffs) |
| 22 | human | 55297 | CCDC91 | coiled-coil domain containi... | XM_024449037.1 | 90.2% | 89.5% | (many diffs) |
| 23 | human | 55297 | CCDC91 | coiled-coil domain containi... | NM_001352084.2 | 86.3% | 85.7% | (many diffs) |
| 24 | human | 55297 | CCDC91 | coiled-coil domain containi... | NM_001330367.2 | 84.1% | 83.4% | (many diffs) |
| 25 | human | 55297 | CCDC91 | coiled-coil domain containi... | NM_001352087.2 | 67.8% | 67.6% | 0_1ins396;454G>A |
| 26 | human | 55297 | CCDC91 | coiled-coil domain containi... | XM_011520735.1 | 67.8% | 67.6% | 0_1ins396;454G>A |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1299
- ORF length:
- 1233
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC AATGTGGAAT AAAGTATCTG GAGTCCATCT TTCACCATCT TCTCCTGAGA 121 TTGTACTGGA CCGTGACCAC TCTTCTTCCA TTGGCTGCCT CTCTTCTGAT GCCATTATTT 181 CATCACCAGA GAATACACAT GCAGCAAATA GCATTGTGAG TCAAACTATT CCAAAAGCAC 241 AGATTCAGCA ATCAACACAC ACTCATCTGG ATATCTCACT TTTTCCATTG GGTTTAACTG 301 ATGAAAAAAG TAATGGAACA ATTGCCCTTG TGGATGATTC TGAGGATCCT GGAGCCAATG 361 TATCTAACAT ACAGCTTCAG CAAAAAATTT CAAGTCTGGA GATTAAACTC AAAGTATCTG 421 AAGAAGAAAA ACAGAGAATT AAACAGGATG TGGAATCATT GATGGAAAAG CATAATGTCT 481 TAGAAAAAGG CTTTCTAAAA GAAAAAGAGC AAGAGGCCAT TTCTTTTCAA GATAGATACA 541 AAGAACTTCA GGAAAAACAT AAACAAGAAT TGGAAGACAT GAGGAAAGCT GGTCACGAAG 601 CCCTCAGCAT TATTGTGGAT GAATATAAGG CACTACTGCA GTCTTCAGTT AAGCAACAAG 661 TAGAAGCTAT TGAAAAACAG TACATTTCTG CAATTGAGAA ACAGGCACAC AAGTGTGAGG 721 AGTTGCTAAA TGCTCAGCAT CAGAGGCTCC TTGAAATGCT AGATACAGAG AAGGAACTGT 781 TAAAAGAAAA AATAAAGGAA GCTTTGATTC AGCAATCTCA AGAACAGAAG GAAATATTGG 841 AAAAGTGTTT GGAGGAAGAA AGGCAAAGAA ATAAAGAGGC ATTAGTATCC GCTGCAAAGC 901 TTGAAAAAGA AGCAATGAAG GATGCAGTTT TAAAAGTCGT AGAAGAAGAA AGAAAAAATT 961 TAGAAAAAGC GCATGCTGAA GAAAGGGAAT TATGGAAGAC AGAACATGCA AAAGATCAAG 1021 AAAAAGTATC TCAGGAAATT CAAAAAGCTA TACAAGAACA AAGAAAAATA AGTCAGGAAA 1081 CTGTTAAGGC AGCAATAATA GAAGAGCAGA AACGAAGTGA AAAGGCTGTG GAAGAGGCAG 1141 TGAAAAGAAC AAGAGATGAA TTGATAGAGT ATATAAAAGA ACAGAAAAGG CTCGATCAAG 1201 TCATCCGCCA AAGAAGCCTG TCCAGTTTGG AACTGTTCCT CTCCTGTGCA CAGAAACAGT 1261 TAAGTGCTTT AATAGCTACG GAACCAGTTG ACATTGAATA CCCAACTTTC TTGTACAAAG 1321 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac