Construct: ORF ccsbBroadEn_12256

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015333.1_s300c1, BRDN0000385825
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ARHGEF40 (55701)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55701 ARHGEF40 Rho guanine nucleotide exch... NM_001278529.2 40.4% 40.4% 1_1437del
2 human 55701 ARHGEF40 Rho guanine nucleotide exch... XM_017021435.2 40.2% 40.2% 1_1437del;2245_2256del
3 human 55701 ARHGEF40 Rho guanine nucleotide exch... XM_017021436.2 40.2% 40.2% 1_1437del;2245_2256del
4 human 55701 ARHGEF40 Rho guanine nucleotide exch... NM_001278530.2 34.5% 34.5% 1_1437del;2100_2101ins144
5 human 55701 ARHGEF40 Rho guanine nucleotide exch... XM_017021437.2 34.5% 34.5% 1_1437del;2100_2101ins144
6 human 55701 ARHGEF40 Rho guanine nucleotide exch... XM_017021434.2 24.4% 24.4% 1_3003del;3811_3822del
7 human 55701 ARHGEF40 Rho guanine nucleotide exch... NM_018071.5 21.4% 21.4% 1_3579del
8 human 55701 ARHGEF40 Rho guanine nucleotide exch... XM_011536937.3 21.4% 21.4% 1_3579del;4387_4398del
9 human 55701 ARHGEF40 Rho guanine nucleotide exch... XM_005267844.3 18.3% 18.3% 1_3579del;4242_4243ins144
10 mouse 268739 Arhgef40 Rho guanine nucleotide exch... NM_198249.4 19.2% 20.2% (many diffs)
11 mouse 268739 Arhgef40 Rho guanine nucleotide exch... XM_006519044.3 19.2% 20.2% (many diffs)
12 mouse 268739 Arhgef40 Rho guanine nucleotide exch... XM_006519041.3 19.1% 20.1% (many diffs)
13 mouse 268739 Arhgef40 Rho guanine nucleotide exch... XM_006519042.3 19.1% 20.1% (many diffs)
14 mouse 268739 Arhgef40 Rho guanine nucleotide exch... XM_006519045.2 19.1% 20.1% (many diffs)
15 mouse 268739 Arhgef40 Rho guanine nucleotide exch... XM_017316026.1 19.1% 20.1% (many diffs)
16 mouse 268739 Arhgef40 Rho guanine nucleotide exch... NM_001145922.1 16.2% 17% (many diffs)
17 mouse 268739 Arhgef40 Rho guanine nucleotide exch... NM_001145921.1 16.1% 16.9% (many diffs)
18 mouse 268739 Arhgef40 Rho guanine nucleotide exch... XM_006519046.2 16.1% 16.9% (many diffs)
19 mouse 268739 Arhgef40 Rho guanine nucleotide exch... XM_011245076.2 13.9% 14.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1044
ORF length:
978
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA GGCTGGCCCT TACCTGCCCC GAGCCCTGCA GCAGCCTCTG GAACAGCTGA
121CTCGGTATGG GCGGCTCCTG GAGGAGCTCC TGAGGGAAGC TGGGCCTGAG CTCAGTTCTG
181AGTGCCGGGC CCTTGGGGCT GCTGTACAGC TGCTCCGGGA ACAAGAGGCC CGTGGCAGAG
241ACCTGCTGGC CGTGGAGGCG GTGCGTGGCT GTGAGATAGA TCTGAAGGAG CAGGGACAGC
301TCTTGCATCG AGACCCCTTC ACTGTCATCT GTGGCCGAAA GAAGTGCCTT CGCCATGTCT
361TTCTCTTCGA GCATCTCCTC CTGTTCAGCA AGCTCAAGGG CCCTGAAGGG GGGTCAGAGA
421TGTTTGTTTA CAAGCAGGCC TTTAAGACTG CTGATATGGG GCTGACAGAA AACATCGGGG
481ACAGCGGACT CTGCTTTGAG TTGTGGTTTC GGCGGCGGCG TGCACGAGAG GCATACACTC
541TGCAGGCAAC CTCACCAGAG ATCAAACTCA AGTGGACAAG TTCTATTGCC CAGCTGCTGT
601GGAGACAGGC AGCCCACAAC AAGGAGCTCC GAGTGCAGCA GATGGTGTCC ATGGGCATTG
661GGAATAAACC CTTCCTGGAC ATCAAAGCCC TTGGGGAGCG GACGCTGAGT GCCCTGCTCA
721CTGGAAGAGC CGCCCGCACC CGGGCCTCCG TGGCCGTGTC ATCCTTTGAG CATGCCGGCC
781CCTCCCTTCC CGGCCTTTCG CCGGGAGCCT GCTCCCTGCC TGCCCGCGTC GAGGAGGAGG
841CCTGGGATCT GGACGTCAAG CAAATTTCCC TGGCCCCAGA AACACTTGAC TCTTCTGGAG
901ATGTGTCCCC AGGACCAAGA AACAGCCCCA GCCTGCAACC CCCCCACCCT GGGAGCAGCA
961CTCCCACCCT GGCCAGTCGA GGGATCTTAG GGCTATCCCG ACAGAGTCAT GCTCGAGCCC
1021TGAGTGACCC CACCACGCCT CTGTGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa
1081agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)