Construct: ORF ccsbBroadEn_12299
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005573.1_s300c1, BRDN0000385028
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CTNNBL1 (56259)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 56259 | CTNNBL1 | catenin beta like 1 | XM_011528917.2 | 68.6% | 68.6% | 1_426del |
| 2 | human | 56259 | CTNNBL1 | catenin beta like 1 | NM_001281495.1 | 58% | 58% | 1_675del |
| 3 | human | 56259 | CTNNBL1 | catenin beta like 1 | XM_024451947.1 | 58% | 58% | 1_675del |
| 4 | human | 56259 | CTNNBL1 | catenin beta like 1 | NM_030877.5 | 55.2% | 55.2% | 1_756del |
| 5 | mouse | 66642 | Ctnnbl1 | catenin, beta like 1 | XM_006500022.3 | 82.5% | 89% | (many diffs) |
| 6 | mouse | 66642 | Ctnnbl1 | catenin, beta like 1 | NM_025680.4 | 49.7% | 53.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 999
- ORF length:
- 933
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAGAAAG 61 TTGGCATGCC TTTTGATGCC AACAAACTGT ATTGCAGTGA AGTGCTGGCC ATATTGCTCC 121 AGGACAATGA TGAAAACAGG GAATTGCTTG GGGAGCTGGA TGGAATCGAT GTGCTTCTTC 181 AGCAGTTATC CGTGTTTAAA AGACACAATC CCAGCACGGC TGAGGAGCAG GAGATGATGG 241 AGAATCTGTT TGATTCCCTC TGCTCCTGTC TAATGCTTAG TTCCAATCGT GAGCGCTTCC 301 TGAAGGGCGA GGGTCTTCAG CTGATGAATC TCATGCTCAG GGAAAAGAAG ATCTCCCGGA 361 GCAGTGCCCT GAAAGTGCTG GACCATGCCA TGATTGGCCC CGAAGGCACA GACAACTGCC 421 ATAAGTTTGT TGACATTCTT GGCTTACGAA CCATCTTTCC CCTCTTTATG AAATCTCCCA 481 GGAAGATCAA GAAAGTGGGA ACCACTGAGA AGGAACATGA AGAGCATGTC TGTTCGATCC 541 TGGCTTCCCT CCTGCGGAAC CTGAGAGGGC AGCAGCGGAC CCGGCTTCTG AATAAATTCA 601 CTGAAAATGA CAGTGAGAAG GTTGACAGAC TAATGGAGTT GCATTTTAAA TATCTGGGTG 661 CAATGCAGGT GGCGGACAAG AAGATTGAAG GGGAAAAACA CGACATGGTC CGGCGAGGAG 721 AGATCATCGA CAATGACACC GAGGAGGAGT TCTACCTCCG GCGCCTGGAT GCGGGGCTCT 781 TTGTTCTCCA GCACATCTGC TACATCATGG CCGAGATCTG CAATGCCAAT GTCCCCCAGA 841 TTCGCCAGAG GGTTCACCAG ATCCTAAACA TGCGAGGAAG CTCCATCAAA ATTGTCAGGC 901 ATATCATCAA GGAGTATGCA GAGAACATCG GGGACGGCCG GAGCCCGGAG TTCCGGGAGA 961 ACGAGCAAAA GCGCATCCTG GGCTTGCTGG AGAACTTCTA CCCAACTTTC TTGTACAAAG 1021 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac