Construct: ORF ccsbBroadEn_12351
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016236.1_s300c1, BRDN0000387443
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ODF2L (57489)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57489 | ODF2L | outer dense fiber of sperm ... | NM_001366779.1 | 14.7% | 14.4% | 111_227del;332_333insA;345_1539del |
| 2 | human | 57489 | ODF2L | outer dense fiber of sperm ... | NM_001366782.1 | 14.7% | 14.4% | 111_227del;332_333insA;345_1539del |
| 3 | human | 57489 | ODF2L | outer dense fiber of sperm ... | NM_001184766.1 | 12.7% | 12.5% | (many diffs) |
| 4 | human | 57489 | ODF2L | outer dense fiber of sperm ... | NM_001366783.1 | 12.4% | 12.1% | (many diffs) |
| 5 | human | 57489 | ODF2L | outer dense fiber of sperm ... | NM_001184765.1 | 12.1% | 11.9% | (many diffs) |
| 6 | human | 57489 | ODF2L | outer dense fiber of sperm ... | NM_020729.3 | 12.1% | 11.9% | (many diffs) |
| 7 | human | 57489 | ODF2L | outer dense fiber of sperm ... | NM_001007022.3 | 11.8% | 11.6% | (many diffs) |
| 8 | human | 57489 | ODF2L | outer dense fiber of sperm ... | NM_001366781.1 | 11.7% | 11.4% | (many diffs) |
| 9 | human | 57489 | ODF2L | outer dense fiber of sperm ... | NM_001366784.1 | 11.7% | 11.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 294
- ORF length:
- 228
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTT GCTAGAAAAT CTAACTGATA ATGAAAGTGA AAATACTAAT CTTAAGAAGA 121 AGGTATTTGA AAAGGAGGCC CATATCCAAG AACTTTCTTG TTTGTTTCAG AGTGAAAAGA 181 GCTTAGAAAC CAAGATAGCC AAGTGGAACC TGCAATCAAG AATGAATAAG AATGAGGCTA 241 TAGTGATGAA AGAAGCAAGT AGGCAAAAAA CTGTAGCTTT AAAAAAAGGC ATCTACCCAA 301 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac