Transcript: Human NM_020729.3

Homo sapiens outer dense fiber of sperm tails 2 like (ODF2L), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-26
Taxon:
Homo sapiens (human)
Gene:
ODF2L (57489)
Length:
7567
CDS:
351..2213

Additional Resources:

NCBI RefSeq record:
NM_020729.3
NBCI Gene record:
ODF2L (57489)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_020729.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000139780 GAACACACCATTAGGGAGCTT pLKO.1 1752 CDS 100% 2.640 3.696 N ODF2L n/a
2 TRCN0000144712 GAACTCTCAGAATTGCAAGAA pLKO.1 1452 CDS 100% 4.950 3.465 N ODF2L n/a
3 TRCN0000144614 GAATGTCTTAAGCACAGCAAT pLKO.1 1968 CDS 100% 4.950 3.465 N ODF2L n/a
4 TRCN0000122238 GCAAACCAAGAAGAATGTCTT pLKO.1 1956 CDS 100% 4.950 3.465 N ODF2L n/a
5 TRCN0000140606 GCGGAGTTGGTAACTCATTCT pLKO.1 519 CDS 100% 4.950 3.465 N ODF2L n/a
6 TRCN0000140637 GCTTGAGAAGAAGCTGGCAAA pLKO.1 1940 CDS 100% 4.050 2.835 N ODF2L n/a
7 TRCN0000140605 GAGAAGAAGCTGGCAAACCAA pLKO.1 1944 CDS 100% 3.000 2.100 N ODF2L n/a
8 TRCN0000140059 CCAGTGAAAGTCATCTCAGCT pLKO.1 442 CDS 100% 2.640 1.848 N ODF2L n/a
9 TRCN0000145522 GCCAAGTTGTCTGAAACAATT pLKO.1 1164 CDS 100% 13.200 7.920 N ODF2L n/a
10 TRCN0000142858 CTTGCTGCTTTGAAGGATGAA pLKO.1 1413 CDS 100% 4.950 2.970 N ODF2L n/a
11 TRCN0000134155 CCTTCCTTACACCTTATACAA pLKO.1 3119 3UTR 100% 5.625 2.813 Y FSIP2 n/a
12 TRCN0000149587 CCTCTTCAAGGAGAACTACAA pLKO.1 2605 3UTR 100% 4.950 2.475 Y POT1-AS1 n/a
13 TRCN0000159082 GAAACCATCATTCTCAGCAAA pLKO.1 4006 3UTR 100% 4.950 2.475 Y ANKRD30B n/a
14 TRCN0000128231 GAGGACACAAACAAATGGAAA pLKO.1 2648 3UTR 100% 4.950 2.475 Y POT1-AS1 n/a
15 TRCN0000156019 CATGGAATACTATGCAGCCAT pLKO.1 3939 3UTR 100% 2.640 1.320 Y LOC340211 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_020729.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12351 pDONR223 100% 12.1% 11.9% None (many diffs) n/a
2 ccsbBroad304_12351 pLX_304 0% 12.1% 11.9% V5 (many diffs) n/a
3 TRCN0000466931 TAGCCCGGTCTCGACCTCAATAAC pLX_317 100% 12.1% 11.9% V5 (many diffs) n/a
Download CSV