Transcript: Human NM_001366781.1

Homo sapiens outer dense fiber of sperm tails 2 like (ODF2L), transcript variant 6, mRNA.

Source:
NCBI, updated 2019-09-26
Taxon:
Homo sapiens (human)
Gene:
ODF2L (57489)
Length:
4198
CDS:
351..2285

Additional Resources:

NCBI RefSeq record:
NM_001366781.1
NBCI Gene record:
ODF2L (57489)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001366781.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000139780 GAACACACCATTAGGGAGCTT pLKO.1 1752 CDS 100% 2.640 3.696 N ODF2L n/a
2 TRCN0000121940 CCAGGTTGATGGAAATCACAA pLKO.1 1778 CDS 100% 4.950 3.465 N ODF2L n/a
3 TRCN0000144712 GAACTCTCAGAATTGCAAGAA pLKO.1 1452 CDS 100% 4.950 3.465 N ODF2L n/a
4 TRCN0000144614 GAATGTCTTAAGCACAGCAAT pLKO.1 1929 CDS 100% 4.950 3.465 N ODF2L n/a
5 TRCN0000122238 GCAAACCAAGAAGAATGTCTT pLKO.1 1917 CDS 100% 4.950 3.465 N ODF2L n/a
6 TRCN0000140606 GCGGAGTTGGTAACTCATTCT pLKO.1 519 CDS 100% 4.950 3.465 N ODF2L n/a
7 TRCN0000140637 GCTTGAGAAGAAGCTGGCAAA pLKO.1 1901 CDS 100% 4.050 2.835 N ODF2L n/a
8 TRCN0000140605 GAGAAGAAGCTGGCAAACCAA pLKO.1 1905 CDS 100% 3.000 2.100 N ODF2L n/a
9 TRCN0000140059 CCAGTGAAAGTCATCTCAGCT pLKO.1 442 CDS 100% 2.640 1.848 N ODF2L n/a
10 TRCN0000145522 GCCAAGTTGTCTGAAACAATT pLKO.1 1164 CDS 100% 13.200 7.920 N ODF2L n/a
11 TRCN0000142858 CTTGCTGCTTTGAAGGATGAA pLKO.1 1413 CDS 100% 4.950 2.970 N ODF2L n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001366781.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12351 pDONR223 100% 11.7% 11.4% None (many diffs) n/a
2 ccsbBroad304_12351 pLX_304 0% 11.7% 11.4% V5 (many diffs) n/a
3 TRCN0000466931 TAGCCCGGTCTCGACCTCAATAAC pLX_317 100% 11.7% 11.4% V5 (many diffs) n/a
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