Construct: ORF ccsbBroadEn_12375
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015352.1_s300c1, BRDN0000385230
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TRMT9B (57604)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57604 | TRMT9B | tRNA methyltransferase 9B (... | XM_017013714.2 | 99.2% | 98.9% | (many diffs) |
| 2 | human | 57604 | TRMT9B | tRNA methyltransferase 9B (... | XM_024447218.1 | 99.2% | 98.9% | (many diffs) |
| 3 | human | 57604 | TRMT9B | tRNA methyltransferase 9B (... | NM_001099677.1 | 88.6% | 88.2% | (many diffs) |
| 4 | human | 57604 | TRMT9B | tRNA methyltransferase 9B (... | XM_024447219.1 | 88.6% | 88.2% | (many diffs) |
| 5 | human | 57604 | TRMT9B | tRNA methyltransferase 9B (... | XM_005273590.4 | 87.1% | 86.8% | (many diffs) |
| 6 | human | 57604 | TRMT9B | tRNA methyltransferase 9B (... | XM_005273591.5 | 87.1% | 86.8% | (many diffs) |
| 7 | human | 57604 | TRMT9B | tRNA methyltransferase 9B (... | XM_024447217.1 | 87.1% | 86.8% | (many diffs) |
| 8 | human | 57604 | TRMT9B | tRNA methyltransferase 9B (... | XM_005273588.5 | 86.1% | 85.8% | (many diffs) |
| 9 | human | 57604 | TRMT9B | tRNA methyltransferase 9B (... | XM_017013710.1 | 86.1% | 85.8% | (many diffs) |
| 10 | human | 57604 | TRMT9B | tRNA methyltransferase 9B (... | XM_024447216.1 | 86.1% | 85.8% | (many diffs) |
| 11 | human | 57604 | TRMT9B | tRNA methyltransferase 9B (... | NM_020844.3 | 80.2% | 79.9% | (many diffs) |
| 12 | human | 57604 | TRMT9B | tRNA methyltransferase 9B (... | XM_005273586.4 | 80.2% | 79.9% | (many diffs) |
| 13 | human | 57604 | TRMT9B | tRNA methyltransferase 9B (... | XM_017013705.2 | 80.2% | 79.9% | (many diffs) |
| 14 | human | 57604 | TRMT9B | tRNA methyltransferase 9B (... | XM_017013706.2 | 80.2% | 79.9% | (many diffs) |
| 15 | human | 57604 | TRMT9B | tRNA methyltransferase 9B (... | XM_024447215.1 | 80.2% | 79.9% | (many diffs) |
| 16 | human | 57604 | TRMT9B | tRNA methyltransferase 9B (... | XM_005273585.4 | 76.8% | 76.5% | (many diffs) |
| 17 | human | 57604 | TRMT9B | tRNA methyltransferase 9B (... | XM_011544598.2 | 76.8% | 76.5% | (many diffs) |
| 18 | human | 57604 | TRMT9B | tRNA methyltransferase 9B (... | XM_011544600.3 | 76.8% | 76.5% | (many diffs) |
| 19 | human | 57604 | TRMT9B | tRNA methyltransferase 9B (... | XM_011544601.3 | 76.8% | 76.5% | (many diffs) |
| 20 | human | 57604 | TRMT9B | tRNA methyltransferase 9B (... | XM_024447214.1 | 76.8% | 76.5% | (many diffs) |
| 21 | human | 57604 | TRMT9B | tRNA methyltransferase 9B (... | XM_005273584.5 | 69.6% | 69.4% | (many diffs) |
| 22 | human | 57604 | TRMT9B | tRNA methyltransferase 9B (... | XM_011544596.3 | 67.5% | 67.3% | (many diffs) |
| 23 | human | 57604 | TRMT9B | tRNA methyltransferase 9B (... | XM_011544597.3 | 67.5% | 67.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1167
- ORF length:
- 1101
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGT ATGTGACAAC CTTAATCTCC CCTTTAGGGA TGAGGGCTTC GATGCCATCA 121 TCTCCATAGG AGTCATACAT CATTTTTCTA CAAAACAAAG AAGAATCAGA GCAATAAAAG 181 AAATGGCCAG GGTCTTAGTT CCCGGAGGCC AACTGATGAT TTACGTTTGG GCAATGGAAC 241 AAAAGAACCG TCGCTTTGAG AAGCAAGACG TGCTTGTTCC ATGGAACAGG GCCCTGTGTT 301 CCCAGCTCTT CTCAGAGTCC AGCCAGTCTG GGAGGAAGAG GCAGTGTGGA TACCCAGAAA 361 GAGGCCATCC CTACCATCCT CCTTGCTCTG AGTGTAGCTG TTCTGTTTGT TTTAAAGAGC 421 AGGGTGGTTC AAAACGGTCC CACAGTGTGG GCTATGAACC TGCTATGGCA AGAACCTGTT 481 TTGCAAATAT TTCTAAGGAA GGCGAGGAAG AATATGGATT TTACAGCACA TTAGGAAAAT 541 CGTTTCGTTC CTGGTTTTTC TCCAGATCTT TGGATGAATC GACTCTGAGG AAGCAAATTG 601 AAAGAGTAAG ACCCTTGAAA AACACAGAAG TTTGGGCCAG TAGCACTGTA ACAGTCCAGC 661 CTTCCAGACA CTCTAGTCTA GACTTTGATC ACCAAGAGCC ATTTTCAACA AAAGAGCAAA 721 GTTTAGATGA GGAAGTGTTT GTGGAATCTT CTTCTGGAAA ACACTTGGAG TGGCTGAGAG 781 CACCAGGCAC TCTGAAACAT TTAAATGGAG ACCATCAAGG GGAAATGAGG AGAAATGGAG 841 GGGGAAATTT TCTGGATAGC ACTAATACTG GTGTGAATTG TGTGGATGCA GGCAACATAG 901 AAGATGATAA TCCTTCTGCT AGTAAAATAT TGAGAAGGAT TTCTGCAGTC GATTCCACAG 961 ATTTCAACCC AGATGATACA ATGTCTGTCG AAGATCCACA GACTGATGTT TTGGACTCCA 1021 CAGCCTTTAT GCGCTACTAC CATGTGTTTC GAGAAGGGGA GCTCTGCAGT CTGCTCAAGG 1081 AGAATGTGTC AGAGCTCCGT ATCCTGAGTT CTGGGAATGA TCATGGTAAC TGGTGTATCA 1141 TTGCAGAGAA AAAGGGAGGT TGTGATTGCC CAACTTTCTT GTACAAAGTt ggcattataa 1201 gaaagcattg cttatcaatt tgttgcaacg aac