Construct: ORF ccsbBroadEn_12402
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004784.1_s300c1, BRDN0000397874
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ANKRD36B (57730)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | NM_001353337.2 | 63% | 62.7% | 450_451insAAT;452T>A;453_454ins261 |
| 2 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | NM_198555.4 | 58.9% | 57.7% | (many diffs) |
| 3 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XM_011511557.3 | 29.6% | 28.8% | (many diffs) |
| 4 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XM_011511558.2 | 29.6% | 28.8% | (many diffs) |
| 5 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XM_011511555.2 | 29.2% | 28.4% | (many diffs) |
| 6 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XM_011511556.2 | 29.2% | 28.4% | (many diffs) |
| 7 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XM_017004584.2 | 19% | 18.5% | (many diffs) |
| 8 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XR_002959321.1 | 18.9% | (many diffs) | |
| 9 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XM_017004579.2 | 18% | 17.5% | (many diffs) |
| 10 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XM_017004580.2 | 18% | 17.5% | (many diffs) |
| 11 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XM_017004581.2 | 18% | 17.5% | (many diffs) |
| 12 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XM_017004582.2 | 18% | 17.5% | (many diffs) |
| 13 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XR_001738869.2 | 17.7% | (many diffs) | |
| 14 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XM_017004578.2 | 17.6% | 17.1% | (many diffs) |
| 15 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | NM_025190.3 | 17.6% | 17.1% | (many diffs) |
| 16 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XM_005263995.5 | 17.6% | 17.1% | (many diffs) |
| 17 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XM_006712661.2 | 17.6% | 17.1% | (many diffs) |
| 18 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_011511131.1 | 16.8% | 15.6% | (many diffs) |
| 19 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XM_017004583.2 | 16.6% | 14.1% | (many diffs) |
| 20 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XR_001738741.1 | 14.8% | (many diffs) | |
| 21 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004044.1 | 13% | 12.1% | (many diffs) |
| 22 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004045.1 | 13% | 12.1% | (many diffs) |
| 23 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004039.1 | 12.7% | 11.9% | (many diffs) |
| 24 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004040.1 | 12.7% | 11.9% | (many diffs) |
| 25 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004041.1 | 12.7% | 11.9% | (many diffs) |
| 26 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004043.1 | 12.7% | 11.9% | (many diffs) |
| 27 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004025.1 | 12.5% | 11.6% | (many diffs) |
| 28 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004026.1 | 12.5% | 11.6% | (many diffs) |
| 29 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004027.1 | 12.5% | 11.6% | (many diffs) |
| 30 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004028.1 | 12.5% | 11.6% | (many diffs) |
| 31 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004030.1 | 12.5% | 11.6% | (many diffs) |
| 32 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004031.1 | 12.5% | 11.6% | (many diffs) |
| 33 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004032.1 | 12.5% | 11.6% | (many diffs) |
| 34 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004033.1 | 12.5% | 11.6% | (many diffs) |
| 35 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004034.1 | 12.5% | 11.6% | (many diffs) |
| 36 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004035.1 | 12.5% | 11.6% | (many diffs) |
| 37 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004036.1 | 12.5% | 11.6% | (many diffs) |
| 38 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004037.1 | 12.5% | 11.6% | (many diffs) |
| 39 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_024452877.1 | 12.5% | 11.6% | (many diffs) |
| 40 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004011.1 | 12.3% | 11.4% | (many diffs) |
| 41 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004012.1 | 12.3% | 11.4% | (many diffs) |
| 42 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004013.1 | 12.3% | 11.4% | (many diffs) |
| 43 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004014.1 | 12.3% | 11.4% | (many diffs) |
| 44 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004015.1 | 12.3% | 11.4% | (many diffs) |
| 45 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004016.1 | 12.3% | 11.4% | (many diffs) |
| 46 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004017.1 | 12.3% | 11.4% | (many diffs) |
| 47 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004018.1 | 12.3% | 11.4% | (many diffs) |
| 48 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004019.1 | 12.3% | 11.4% | (many diffs) |
| 49 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004020.1 | 12.3% | 11.4% | (many diffs) |
| 50 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004021.1 | 12.3% | 11.4% | (many diffs) |
| 51 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004022.1 | 12.3% | 11.4% | (many diffs) |
| 52 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004023.1 | 12.3% | 11.4% | (many diffs) |
| 53 | human | 57730 | ANKRD36B | ankyrin repeat domain 36B | XR_922976.2 | 12.2% | (many diffs) | |
| 54 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004010.1 | 12.1% | 11.2% | (many diffs) |
| 55 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | NM_001354587.1 | 12% | 11.2% | (many diffs) |
| 56 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_006712514.3 | 12% | 11.2% | (many diffs) |
| 57 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004009.1 | 12% | 11.2% | (many diffs) |
| 58 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XM_017004024.1 | 11.5% | 9.8% | (many diffs) |
| 59 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XR_002959292.1 | 11.2% | (many diffs) | |
| 60 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XR_002959293.1 | 10.6% | (many diffs) | |
| 61 | human | 400986 | ANKRD36C | ankyrin repeat domain 36C | NM_001310154.3 | 10.5% | 9.6% | (many diffs) |
| 62 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XR_002959294.1 | 7.6% | (many diffs) | |
| 63 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XR_922917.2 | 6.7% | (many diffs) | |
| 64 | human | 375248 | ANKRD36 | ankyrin repeat domain 36 | XR_001738739.2 | 6.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 783
- ORF length:
- 717
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GCGCTTGTGC TCGGATGGCT TCGCATTTCC CCATTACTAC ATTAAACCGT 121 ATCATCTGAA GAGGATCCAC AGAGCTGTCT TACGTGGTAA TCTGGAGAAA CTGAAGTACC 181 TTCTGCTCAC GTATTATGAC GCCAATAAGA GAGACAGGAA GGAAAGGACT GCCCTACATT 241 TGGCCTGTGC CACTGGCCAA CCGGAAATGG TACATCTCCT GGTGTCCAGA AGATGTGAGC 301 TTAACCTCTG CGACCGTGAA GACAGGACAC CTCTGATCAA GGCTGTACAA CTGAGGCAGG 361 AGGCTTGTGC AACTCTTCTG CTGCAAAATG GCGCCGATCC AAATATTACG GATGTCTTTG 421 GAAGGACTGC TCTGCACTAC GCTGTGTATA ATGAAGATAC ATCCATGATA GAAAAACTTC 481 TTTCACATGG TACAAATATT GAAGAATGCA GCAAGAATGA ATATCAGCCA CTGTTACTTG 541 CTGTGAGTCG AAGAAAAGTG AAAATGGTGG AATTTTTATT AAAGAAAAAA GCAAATGTAA 601 ATGCCATTGA TTATCTTGGC AGATCAGCCC TCATACTTGC TGTTACTCTT GGAGAAAAAG 661 ATATAGTCAT TCTTCTTCTG CAGCACAATA TTGATGTGTT TTCTCGAGAT GTGTATGGAA 721 AACTTGCAGA AGATTATGCC AGTGAGGCTG AGAATAGAGT TGTCTCCTCA GAAACAACCA 781 GCTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 841 gcaacgaac