Construct: ORF ccsbBroadEn_12414
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015094.1_s300c1, BRDN0000393836
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF462 (58499)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 58499 | ZNF462 | zinc finger protein 462 | NM_001347997.2 | 46.6% | 34.4% | (many diffs) |
| 2 | human | 58499 | ZNF462 | zinc finger protein 462 | XM_017014998.2 | 46.6% | 34.4% | (many diffs) |
| 3 | human | 58499 | ZNF462 | zinc finger protein 462 | XM_006717218.4 | 44.9% | 33.3% | (many diffs) |
| 4 | human | 58499 | ZNF462 | zinc finger protein 462 | NM_021224.6 | 35.2% | 35.2% | 1_4866del;5483A>G;7218T>A |
| 5 | human | 58499 | ZNF462 | zinc finger protein 462 | XM_006717216.4 | 35.2% | 35.2% | 1_4866del;5483A>G;7218T>A |
| 6 | human | 58499 | ZNF462 | zinc finger protein 462 | XM_006717215.4 | 34.4% | 34.4% | (many diffs) |
| 7 | human | 58499 | ZNF462 | zinc finger protein 462 | XM_006717209.4 | 34.4% | 34.3% | (many diffs) |
| 8 | human | 58499 | ZNF462 | zinc finger protein 462 | XM_006717211.4 | 34.4% | 34.3% | (many diffs) |
| 9 | human | 58499 | ZNF462 | zinc finger protein 462 | XM_006717212.4 | 34.4% | 34.3% | (many diffs) |
| 10 | human | 58499 | ZNF462 | zinc finger protein 462 | XM_017014996.2 | 34.4% | 34.3% | (many diffs) |
| 11 | human | 58499 | ZNF462 | zinc finger protein 462 | XM_017014997.2 | 34.4% | 34.3% | (many diffs) |
| 12 | human | 58499 | ZNF462 | zinc finger protein 462 | XM_024447629.1 | 34.4% | 34.3% | (many diffs) |
| 13 | mouse | 242466 | Zfp462 | zinc finger protein 462 | NM_172867.3 | 32.2% | 33.3% | (many diffs) |
| 14 | mouse | 242466 | Zfp462 | zinc finger protein 462 | XM_011250033.1 | 31.9% | 33% | (many diffs) |
| 15 | mouse | 242466 | Zfp462 | zinc finger protein 462 | XM_011250032.1 | 31.9% | 33% | (many diffs) |
| 16 | mouse | 242466 | Zfp462 | zinc finger protein 462 | XM_011250031.1 | 31.4% | 32.6% | (many diffs) |
| 17 | mouse | 242466 | Zfp462 | zinc finger protein 462 | XM_006537915.1 | 31.4% | 32.5% | (many diffs) |
| 18 | mouse | 242466 | Zfp462 | zinc finger protein 462 | XM_006537916.1 | 31.4% | 32.5% | (many diffs) |
| 19 | mouse | 242466 | Zfp462 | zinc finger protein 462 | XM_006537917.3 | 31.4% | 32.5% | (many diffs) |
| 20 | mouse | 242466 | Zfp462 | zinc finger protein 462 | XM_006537918.3 | 31.4% | 32.5% | (many diffs) |
| 21 | mouse | 242466 | Zfp462 | zinc finger protein 462 | XM_006537919.2 | 31.4% | 32.5% | (many diffs) |
| 22 | mouse | 242466 | Zfp462 | zinc finger protein 462 | XM_017320199.1 | 29.9% | 30.9% | (many diffs) |
| 23 | mouse | 242466 | Zfp462 | zinc finger protein 462 | XM_011250035.1 | 29.2% | 30.1% | (many diffs) |
| 24 | mouse | 242466 | Zfp462 | zinc finger protein 462 | XM_017320200.1 | 16.6% | 17.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2718
- ORF length:
- 2652
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC CACTGAAGTG AGCCCTTCCC AAGTCTCCAT CACTGAGGAG GAGGTGGGAG 121 AGGAGCCCGT GTCCACTTCT CACTTCTCTA CCTCCCACCT GGTCTCCCAC ACTGTGTTCC 181 GGTGCCAGCT CTGCAAGTAC TTCTGCTCCA CGAGGAAGGG GATCGCCAGG CACTACCGCA 241 TCAAGCACAA TAATGTCCGA GCCCAGCCAG AAGGCAAGAA CAACCTCTTC AAGTGTGCCC 301 TGTGTGCCTA CACCAACCCC ATCCGCAAAG GTCTGGCAGC CCACTACCAG AAGCGCCACG 361 ACATTGATGC GTATTACACT CACTGCTTGG CAGCCTCCAG GACCATCAGC GACAAGCCCA 421 ACAAAGTGAT CATCCCATCC CCGCCCAAGG ACGACTCCCC TCAGCTGAGC GAGGAACTCC 481 GGCGGGCAGT GGAGAAGAAA AAGTGCTCCT TGTGCTCTTT CCAGTCGTTC AGCAAGAAGG 541 GCATCGTGTC CCATTACATG AAACGCCACC CAGGGGTGTT CCCAAAGAAG CAGCACGCCA 601 GCAAGTTGGG GGGCTACTTC ACGGCCGTCT ATGCAGATGA GCATGAGAAG CCCACACTGA 661 TGGAAGAAGA GGAGAGAGGC AGCTTTGAGA AAGCCGAGGT GGAGGGTGAA GCTCAGGAAA 721 TCGAGTGGCT CCCATTCCGC TGCATCAAAT GCTTCAAGCT GTCCTTTAGC ACTGCAGAGC 781 TGCTGTGCAT GCATTACACT GACCACCACA GTCGGGACCT AAAGAGGGAC TTCATCATTC 841 TGGGCAACGG CCCCCGCTTG CAGAACTCCA CCTACCAGTG TAAGCACTGT GATAGCAAAC 901 TGCAAAGCAC AGCCGAGCTG ACCTCACACT TGAACATTCA CAATGAGGAA TTCCAGAAGC 961 GTGCCAAACG TCAGGAGAGG AGGAAACAGC TTTTGAGCAA GCAGAAATAT GCAGATGGTG 1021 CTTTTGCAGA TTTCAAACAA GAGAGGCCTT TTGGTCACTT AGAAGAGGTG CCAAAGATCA 1081 AGGAGAGGAA AGTGGTGGGC TACAAATGTA AATTCTGTGT GGAAGTGCAC CCAACGCTCC 1141 GAGCCATCTG CAATCACCTC CGAAAGCACG TCCAGTATGG CAATGTCCCA GCTGTGTCAG 1201 CTGCTGTGAA GGGGCTGCGT TCTCATGAGA GGAGCCACCT GGCCCTGGCC ATGTTTACCC 1261 GCGAGGACAA GTACAGCTGC CAGTATTGCT CGTTTGTTTC TGCTTTCAGG CACAATTTGG 1321 ATCGCCATAT GCAAACCCAC CACGGACACC ATAAACCATT CCGATGCAAA CTCTGCTCCT 1381 TCAAGTCCTC CTATAACAGC CGGCTGAAAA CACATATACT CAAAGCTCAT GCTGGTGAGC 1441 ATGCCTACAA GTGTTCTTGG TGCTCATTCT CCACCATGAC AATCAGCCAG CTGAAGGAAC 1501 ACTCCCTCAA GGTCCACGGA AAAGCCCTGA CCCTCCCCAG GCCACGGATC GTCAGTCTCC 1561 TCTCCTCACA CTCCCACCAC TCCTCCCAAA AAGCTACCCC GGCTGAAGAA GTGGAAGACT 1621 CCAATGACTC ATCATATTCA GAGCCCCCAG ATGTTCAGCA GCAGTTGAAC CACTATCAGT 1681 CAGCTGCCCT GGCAAGGAAC AACAGCCGTG TTAGCCCTGT GCCTCTTTCT GGGGCTGCTG 1741 CTGGCACTGA GCAGAAAACT GAAGCCGTGC TTCACTGCGA ATTCTGTGAA TTCTCCTCCG 1801 GCTACATCCA GAGCATCAGG CGTCATTACC GGGACAAGCA TGGTGGGAAG AAGCTTTTCA 1861 AGTGCAAAGA CTGCTCCTTT TACACAGGCT TTAAATCTGC TTTTACTATG CACGTGGAAG 1921 CTGGGCACTC AGCAGTTCCC GAGGAGGGCC CCAAAGATCT TCGCTGTCCT CTCTGCCTCT 1981 ATCACACCAA ATACAAGCGC AACATGATTG ACCACATCGT GCTGCACCGA GAAGAGCGTG 2041 TTGTCCCCAT TGAAGTTTGC CGGTCCAAAC TGTCCAAATA CTTGCAGGGA GTAGTTTTCC 2101 GCTGTGATAA GTGTACCTTC ACCTGCTCCA GTGATGAGAG CCTCCAGCAA CATATAGAAA 2161 AGCACAATGA ACTGAAACCT TACAAATGCC AGCTCTGCTA CTATGAGACC AAGCACACGG 2221 AGGAACTGGA CAGCCACCTT CGGGATGAGC ATAAGGTAAG CCGTAACTTT GAGCTGGTTG 2281 GACGGGTTAA CTTGGATCAG CTGGAACAGA TGAAGGAGAA AATGGAGAGC TCCAGCAGCG 2341 ATGATGAGGA CAAGGAAGAA GAAATGAACA GCAAGGCTGA AGACAGAGAG CTGATGAGAT 2401 TTTCTGACCA CGGGGCAGCT CTTAACACTG AGAAGCGTTT TCCATGTGAA TTTTGTGGAC 2461 GGGCGTTTTC ACAGGGCTCT GAGTGGGAAA GACATGTGCT GAGACACGGC ATGGCATTGA 2521 ATGACACCAA GCAGGTGAGC AGAGAAGAAA TCCACCCAAA AGAGATCATG GAGAACAGTG 2581 TTAAAATGCC CTCCATAGAG GAAAAGGAAG ATGACGAGGC CATTGGGATA GACTTTTCCC 2641 TAAAGAATGA AACAGTAGCC ATCTGTGTAG TAACTGCCGA CAAATCTCTC CTGGAGAATG 2701 CAGAGGCCAA AAAAGAATGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 2761 gcttatcaat ttgttgcaac gaac