Construct: ORF ccsbBroadEn_12444

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014540.1_s300c1, BRDN0000457410
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CLSTN2 (64084)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64084 CLSTN2 calsyntenin 2 NM_022131.3 99.8% 99.7% 2283C>T;2540_2541delTCinsAT;2837T>C
2 human 64084 CLSTN2 calsyntenin 2 XM_017007022.2 96.7% 95.6% (many diffs)
3 mouse 64085 Clstn2 calsyntenin 2 XM_006511334.3 88.9% 94.1% (many diffs)
4 mouse 64085 Clstn2 calsyntenin 2 NM_022319.2 87.1% 92.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2934
ORF length:
2865
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCTGCCTGGG CGGCTGTGCT GGGTGCCGCT CCTGCTGGCG CTGGGCGTGG
121GGAGCGGCAG CGGCGGTGGC GGGGACAGCC GGCAGCGCCG CCTCCTCGCG GCTAAAGTCA
181ATAAGCACAA GCCATGGATC GAGACTTCAT ATCATGGAGT CATAACTGAG AACAATGACA
241CAGTCATTTT GGACCCACCA CTGGTAGCCC TGGATAAAGA TGCACCGGTT CCTTTTGCAG
301GGGAAATCTG TGCGTTCAAG ATCCATGGCC AGGAGCTGCC CTTTGAGGCT GTGGTGCTCA
361ACAAGACATC AGGAGAGGGC CGGCTCCGTG CCAAGAGCCC CATTGACTGT GAGTTGCAGA
421AGGAGTACAC ATTCATCATC CAGGCCTATG ACTGTGGTGC TGGGCCCCAC GAGACAGCCT
481GGAAAAAGTC ACACAAGGCC GTGGTCCATA TACAGGTGAA GGATGTCAAC GAGTTTGCTC
541CCACCTTCAA AGAGCCAGCC TACAAGGCTG TTGTGACGGA GGGCAAGATC TATGACAGCA
601TTCTGCAGGT GGAGGCCATT GACGAGGACT GCTCCCCACA GTACAGCCAG ATCTGCAACT
661ATGAAATCGT CACCACAGAT GTGCCTTTTG CCATCGACAG AAATGGCAAC ATCAGGAACA
721CTGAGAAGCT GAGCTATGAC AAACAACACC AGTATGAGAT CCTGGTGACC GCCTACGACT
781GTGGACAGAA GCCCGCTGCT CAGGACACCC TGGTGCAGGT GGATGTGAAG CCAGTTTGCA
841AGCCTGGCTG GCAAGACTGG ACCAAGAGGA TTGAGTACCA GCCTGGCTCC GGGAGCATGC
901CCCTGTTCCC CAGCATCCAC CTGGAGACGT GCGATGGAGC CGTGTCTTCC CTCCAGATCG
961TCACAGAGCT GCAGACTAAT TACATTGGGA AGGGTTGTGA CCGGGAGACC TACTCTGAGA
1021AATCCCTTCA AAAGTTATGT GGAGCCTCCT CTGGCATCAT TGACCTCTTG CCATCCCCTA
1081GCGCTGCCAC CAACTGGACT GCAGGACTGC TGGTGGACAG CAGTGAGATG ATCTTCAAGT
1141TTGACGGCAG GCAGGGTGCC AAAGTCCCCG ATGGGATTGT GCCCAAGAAC CTGACCGATC
1201AGTTCACCAT CACCATGTGG ATGAAACACG GCCCCAGCCC TGGTGTGAGA GCCGAGAAGG
1261AAACCATCCT CTGCAACTCA GACAAAACCG AAATGAACCG GCATCACTAT GCCCTGTATG
1321TGCACAACTG CCGCCTCGTC TTTCTCTTGC GGAAGGACTT CGACCAGGCT GACACCTTTC
1381GCCCCGCGGA GTTCCACTGG AAGCTGGATC AGATTTGTGA CAAAGAGTGG CACTACTATG
1441TCATCAATGT GGAGTTTCCT GTGGTAACCT TATACATGGA TGGAGCAACA TATGAACCAT
1501ACCTGGTGAC CAACGACTGG CCCATTCATC CATCTCACAT AGCCATGCAA CTCACAGTCG
1561GCGCTTGTTG GCAAGGAGGA GAAGTCACCA AACCACAGTT TGCTCAGTTC TTTCATGGAA
1621GCCTGGCCAG TCTCACCATC CGCCCTGGCA AAATGGAAAG CCAGAAGGTG ATCTCCTGCC
1681TGCAGGCCTG CAAGGAAGGG CTGGACATTA ATTCCTTGGA AAGCCTTGGC CAAGGAATAA
1741AGTATCACTT CAACCCCTCG CAGTCCATCC TGGTGATGGA AGGTGACGAC ATTGGGAACA
1801TTAACCGTGC TCTCCAGAAA GTCTCCTACA TCAACTCCAG GCAGTTCCCA ACGGCGGGTG
1861TGCGGCGCCT CAAAGTATCC TCCAAAGTCC AGTGCTTTGG GGAAGACGTA TGCATCAGTA
1921TCCCTGAGGT AGATGCCTAT GTGATGGTCC TCCAGGCCAT CGAGCCCCGG ATCACCCTCC
1981GGGGCACAGA CCACTTCTGG AGACCTGCTG CCCAGTTTGA AAGTGCCAGG GGAGTGACCC
2041TCTTCCCTGA TATCAAGATT GTGAGCACCT TCGCCAAAAC CGAAGCCCCC GGGGACGTGA
2101AAACCACAGA CCCCAAATCA GAAGTCTTAG AGGAAATGCT TCATAACTTA GATTTCTGTG
2161ACATTTTGGT GATCGGAGGG GACTTGGACC CAAGGCAGGA GTGCTTGGAG CTCAACCACA
2221GTGAGCTCCA CCAACGACAC CTGGATGCCA CTAATTCTAC TGCAGGCTAC TCCATCTACG
2281GTGTGGGCTC CATGAGCCGC TATGAGCAGG TGCTACATCA CATCCGCTAC CGCAACTGGC
2341GTCCGGCTTC TCTTGAGGCC CGGCGTTTCC GGATTAAGTG CTCAGAACTC AATGGGCGCT
2401ACACTAGCAA TGAGTTCAAC TTGGAGGTCA GCATCCTTCA TGAAGACCAA GTCTCAGATA
2461AGGAGCATGT CAATCATCTG ATTGTGCAGC CTCCCTTCCT CCAGTCTGTC CATCATCCTG
2521AGTCCCGGAG TAGCATCCAG CACAGTTCAG TGGTCCCAAG CATTGCCACA GTGGTCATCA
2581TCATCTCCGT GTGCATGCTT GTGTTTGATG TGGCCATGGG TGTGTACCGG GTCCGGATCG
2641CCCACCAGCA CTTCATCCAG GAGACTGAGG CTGCCAAGGA ATCTGAGATG GACTGGGACG
2701ATTCTGCGCT GACTATCACA GTCAACCCCA TGGAGAAACA TGAAGGACCA GGGCATGGGG
2761AAGATGAGAC TGAGGGAGAA GAGGAGGAAG AAGCCGAGGA AGAAATGAGC TCCAGCAGTG
2821GCTCTGACGA CAGCGAAGAG GAGGAGGAGG AGGAAGGGAT GGGCAGAGGC AGACATGGGC
2881AGAATGGAGC CAGGCAAGCC CAGCCGGAGT GGGATGACTC CACCCTCCCC TACTTGCCAA
2941CTTTCTTGTA CAAAGTTGGc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)