Construct: ORF ccsbBroadEn_12459

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014340.1_s300c1, BRDN0000392295
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MMS19 (64210)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64210 MMS19 MMS19 homolog, cytosolic ir... XM_017016534.2 47.6% 47.7% 1_963del;1326C>T
2 human 64210 MMS19 MMS19 homolog, cytosolic ir... XM_017016535.2 47.6% 47.7% 1_963del;1326C>T
3 human 64210 MMS19 MMS19 homolog, cytosolic ir... XM_011540063.3 47.5% 47.6% 1_966del;1329C>T
4 human 64210 MMS19 MMS19 homolog, cytosolic ir... XM_017016533.2 44% 44% 1_1116del;1479C>T
5 human 64210 MMS19 MMS19 homolog, cytosolic ir... XM_024448126.1 44% 44% 1_1116del;1479C>T
6 human 64210 MMS19 MMS19 homolog, cytosolic ir... NM_001351358.1 43.9% 43.9% 1_1119del;1482C>T
7 human 64210 MMS19 MMS19 homolog, cytosolic ir... NM_001351359.1 43.9% 43.9% 1_1119del;1482C>T
8 human 64210 MMS19 MMS19 homolog, cytosolic ir... XM_006717945.3 43.9% 43.9% 1_1119del;1482C>T
9 human 64210 MMS19 MMS19 homolog, cytosolic ir... XM_017016527.2 43.9% 43.9% 1_1119del;1482C>T
10 human 64210 MMS19 MMS19 homolog, cytosolic ir... XM_017016529.2 43.9% 43.9% 1_1119del;1482C>T
11 human 64210 MMS19 MMS19 homolog, cytosolic ir... XM_017016531.1 43.9% 43.9% 1_1119del;1482C>T
12 human 64210 MMS19 MMS19 homolog, cytosolic ir... XM_024448123.1 43.9% 43.9% 1_1119del;1482C>T
13 human 64210 MMS19 MMS19 homolog, cytosolic ir... XM_024448124.1 43.9% 43.9% 1_1119del;1482C>T
14 human 64210 MMS19 MMS19 homolog, cytosolic ir... XM_024448125.1 43.9% 43.9% 1_1119del;1482C>T
15 human 64210 MMS19 MMS19 homolog, cytosolic ir... XM_005270041.1 35.3% 35.3% 1_1608del;1971C>T
16 human 64210 MMS19 MMS19 homolog, cytosolic ir... XM_011540062.1 35.3% 35.3% 1_1608del;1971C>T
17 human 64210 MMS19 MMS19 homolog, cytosolic ir... NM_001289404.1 33.6% 33.6% 1_1734del;2097C>T
18 human 64210 MMS19 MMS19 homolog, cytosolic ir... XM_017016524.2 33.6% 33.6% 1_1734del;2097C>T
19 human 64210 MMS19 MMS19 homolog, cytosolic ir... NM_001351357.1 33.5% 33.6% 1_1737del;2100C>T
20 human 64210 MMS19 MMS19 homolog, cytosolic ir... XM_005270035.3 33.5% 33.6% 1_1737del;2100C>T
21 human 64210 MMS19 MMS19 homolog, cytosolic ir... XM_017016522.1 33.5% 33.6% 1_1737del;2100C>T
22 human 64210 MMS19 MMS19 homolog, cytosolic ir... XM_017016521.2 31.4% 31.4% 1_1914del;2277C>T
23 human 64210 MMS19 MMS19 homolog, cytosolic ir... NM_001330128.1 31.4% 31.4% 1_1917del;2280C>T
24 human 64210 MMS19 MMS19 homolog, cytosolic ir... XM_017016519.2 30.1% 30.1% 1_2034del;2397C>T
25 human 64210 MMS19 MMS19 homolog, cytosolic ir... XM_017016518.2 29.6% 29.7% 1_2079del;2442C>T
26 human 64210 MMS19 MMS19 homolog, cytosolic ir... NM_001289403.1 29.6% 29.6% 1_2082del;2445C>T
27 human 64210 MMS19 MMS19 homolog, cytosolic ir... XM_017016517.2 28.5% 28.5% 1_2199del;2562C>T
28 human 64210 MMS19 MMS19 homolog, cytosolic ir... XM_006717944.4 28.4% 28.4% 1_2208del;2571C>T
29 human 64210 MMS19 MMS19 homolog, cytosolic ir... NM_001289405.1 28.4% 28.4% 1_2211del;2574C>T
30 human 64210 MMS19 MMS19 homolog, cytosolic ir... NM_022362.5 28.4% 28.4% 1_2211del;2574C>T
31 human 64210 MMS19 MMS19 homolog, cytosolic ir... XM_017016516.2 27.4% 27.4% 1_2325del;2688C>T
32 human 64210 MMS19 MMS19 homolog, cytosolic ir... NM_001351356.1 27.3% 27.4% 1_2328del;2691C>T
33 human 64210 MMS19 MMS19 homolog, cytosolic ir... XR_002957006.1 25.8% (many diffs)
34 human 64210 MMS19 MMS19 homolog, cytosolic ir... XR_001747180.2 25.6% (many diffs)
35 human 64210 MMS19 MMS19 homolog, cytosolic ir... XR_001747179.2 24.8% (many diffs)
36 human 64210 MMS19 MMS19 homolog, cytosolic ir... XR_001747178.2 24.7% (many diffs)
37 mouse 72199 Mms19 MMS19 (MET18 S. cerevisiae) XM_011247354.2 37.6% 40.6% (many diffs)
38 mouse 72199 Mms19 MMS19 (MET18 S. cerevisiae) XM_017318295.1 37.6% 40.6% (many diffs)
39 mouse 72199 Mms19 MMS19 (MET18 S. cerevisiae) XM_011247352.2 37.5% 40.5% (many diffs)
40 mouse 72199 Mms19 MMS19 (MET18 S. cerevisiae) XM_011247353.2 37.5% 40.5% (many diffs)
41 mouse 72199 Mms19 MMS19 (MET18 S. cerevisiae) XM_017318293.1 37.5% 40.5% (many diffs)
42 mouse 72199 Mms19 MMS19 (MET18 S. cerevisiae) XM_017318294.1 37.5% 40.5% (many diffs)
43 mouse 72199 Mms19 MMS19 (MET18 S. cerevisiae) XM_011247350.2 28.5% 30.7% (many diffs)
44 mouse 72199 Mms19 MMS19 (MET18 S. cerevisiae) XM_006527358.3 24.2% 26.2% (many diffs)
45 mouse 72199 Mms19 MMS19 (MET18 S. cerevisiae) NM_028152.3 24.2% 26.1% (many diffs)
46 mouse 72199 Mms19 MMS19 (MET18 S. cerevisiae) XR_001782619.1 21.3% (many diffs)
47 mouse 72199 Mms19 MMS19 (MET18 S. cerevisiae) XR_001782618.1 21.3% (many diffs)
48 mouse 72199 Mms19 MMS19 (MET18 S. cerevisiae) XR_001782617.1 19.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
945
ORF length:
879
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCG GGAGCTTTTG GAACTGAGCT GCTGCCACAG CTGCCCCTTT TCTTCCACCG
121CTGCTGCCAA GTGCTTTGCA GGACTCCTCA ACAAGCACCC TGCAGGGCAG CAGCTGGATG
181AATTCCTACA GCTAGCTGTG GACAAAGTGG AGGCTGGCCT GGGCTCTGGG CCCTGTCGTA
241GTCAGGCCTT CACTCTTCTT CTCTGGGTAA CAAAGGCCCT AGTGCTCAGA TACCATCCTC
301TCAGCTCCTG CCTTACAGCC CGGCTCATGG GCCTCCTGAG TGACCCAGAA TTAGGTCCAG
361CAGCAGCTGA TGGCTTCTCT CTGCTCATGT CTGACTGCAC TGATGTGCTG ACTCGTGCTG
421GCCATGCTGA AGTGCGGATC ATGTTCCGCC AGCGGTTCTT CACAGATAAT GTGCCTGCTT
481TGGTCCAGGG CTTCCATGCT GCTCCCCAAG ATGTGAAGCC AAACTACTTG AAGGGTCTTT
541CTCATGTACT TAACAGGCTG CCCAAGCCTG TACTCTTGCC AGAGCTGCCC ACGCTTCTTT
601CCTTGCTGCT GGAGGCCCTG TCCTGCCCTG ACTGTGTGGT GCAGCTCTCC ACCCTCAGCT
661GCCTTCAGCC TCTTCTACTG GAAGCACCCC AAGTCATGAG TCTTCACGTG GACACCCTCG
721TCACCAAGTT TCTGAACCTC AGCTCTAGCC CTTCCATGGC TGTCCGGATC GCCGCACTGC
781AGTGCATGCA TGCTCTCACT CGCCTGCCCA CCCCTGTGCT GCTGCCGTAC AAACCACAGG
841TGATTCGGGC CTTAGCCAAA CCCCTGGATG ACAAGAAGAG ACTGGTGCGC AAGGAAGCAG
901TGTCAGCCAG AGGGGAGTGG TTTCTGTTGG GGAGCCCTGG CAGCTGCCCA ACCTTCTTGT
961ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)