Transcript: Mouse XM_006527268.2

PREDICTED: Mus musculus zinc finger, DHHC domain containing 6 (Zdhhc6), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Zdhhc6 (66980)
Length:
2093
CDS:
360..1601

Additional Resources:

NCBI RefSeq record:
XM_006527268.2
NBCI Gene record:
Zdhhc6 (66980)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006527268.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000365405 AGTCAGAAGTGTTCGCTATAA pLKO_005 1295 CDS 100% 13.200 18.480 N ZDHHC6 n/a
2 TRCN0000012171 CGCTATAAAGTCATAGAAGAT pLKO.1 1308 CDS 100% 4.950 6.930 N Zdhhc6 n/a
3 TRCN0000428886 TAAAGATCGCATTCAGTATTA pLKO_005 1097 CDS 100% 13.200 10.560 N Zdhhc6 n/a
4 TRCN0000012170 CCCTGGGTGTTATAGCAATAT pLKO.1 439 CDS 100% 13.200 9.240 N Zdhhc6 n/a
5 TRCN0000416379 CAACTGGATGAAGTCTTCATT pLKO_005 1119 CDS 100% 5.625 3.938 N Zdhhc6 n/a
6 TRCN0000429693 TCACTAAGTCTTCATTACTTG pLKO_005 1619 3UTR 100% 4.950 3.465 N Zdhhc6 n/a
7 TRCN0000435201 CAGAAATGTTTATTACCGTTT pLKO_005 1730 3UTR 100% 4.050 2.835 N Zdhhc6 n/a
8 TRCN0000012172 CCTTACATACAACTGGAGGAA pLKO.1 502 CDS 100% 2.640 1.848 N Zdhhc6 n/a
9 TRCN0000012169 CCTTCATAGAAGGTACTTCAA pLKO.1 1486 CDS 100% 4.950 2.970 N Zdhhc6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006527268.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12473 pDONR223 100% 88.2% 92% None (many diffs) n/a
2 ccsbBroad304_12473 pLX_304 0% 88.2% 92% V5 (many diffs) n/a
3 TRCN0000470924 AGTTTCAAGACGTGTTTGATTCTT pLX_317 42.1% 88.2% 92% V5 (many diffs) n/a
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