Construct: ORF ccsbBroadEn_12478

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009429.1_s300c1, BRDN0000391958
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
COPS7B (64708)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64708 COPS7B COP9 signalosome subunit 7B NM_001282952.2 100% 100%
2 human 64708 COPS7B COP9 signalosome subunit 7B XM_017004717.1 100% 100%
3 human 64708 COPS7B COP9 signalosome subunit 7B XM_024453043.1 100% 100%
4 human 64708 COPS7B COP9 signalosome subunit 7B XM_011511638.2 82.5% 64.8% 315_382del;513_514ins26
5 human 64708 COPS7B COP9 signalosome subunit 7B XM_011511639.1 82.5% 64.8% 315_382del;513_514ins26
6 human 64708 COPS7B COP9 signalosome subunit 7B XM_011511640.1 82.5% 64.8% 315_382del;513_514ins26
7 human 64708 COPS7B COP9 signalosome subunit 7B NM_001282951.2 74.6% 74.1% 1_157del;158_159insT;160G>A
8 human 64708 COPS7B COP9 signalosome subunit 7B NM_001282949.3 68.2% 68.2% 1_219del
9 human 64708 COPS7B COP9 signalosome subunit 7B NM_001369483.1 59.4% 59.4% 1_321del
10 human 64708 COPS7B COP9 signalosome subunit 7B NM_022730.4 59.4% 59.4% 1_321del
11 human 64708 COPS7B COP9 signalosome subunit 7B NM_001282950.3 52.6% 40.9% 1_321del;636_688del;819_820ins26
12 human 64708 COPS7B COP9 signalosome subunit 7B NM_001308381.2 51.7% 40.5% 1_321del;636_703del;834_835ins26
13 human 64708 COPS7B COP9 signalosome subunit 7B XM_006712693.2 51.7% 40.5% 1_321del;636_703del;834_835ins26
14 human 64708 COPS7B COP9 signalosome subunit 7B XR_001738900.2 21.5% 1_442del;757_943del;1101_2182del
15 mouse 26895 Cops7b COP9 signalosome subunit 7B XM_011248010.2 84.5% 89.1% (many diffs)
16 mouse 26895 Cops7b COP9 signalosome subunit 7B XM_006529625.3 57.9% 61.1% (many diffs)
17 mouse 26895 Cops7b COP9 signalosome subunit 7B NM_172974.2 55.3% 58.3% (many diffs)
18 mouse 26895 Cops7b COP9 signalosome subunit 7B XM_006529623.3 55.3% 58.3% (many diffs)
19 mouse 26895 Cops7b COP9 signalosome subunit 7B XM_006529624.3 55.3% 58.3% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
537
ORF length:
471
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA GTGTATCCCC TACTCCGTGT TGCTGAAAGA CCTGGAGATG CGGAATCTCC
121GGGAACTAGA AGACCTTATC ATTGAGGCTG TCTACACTGA CATCATCCAG GGCAAGCTGG
181ACCAGCGAAA CCAGCTGCTG GAAGTGGATT TCTGCATTGG CCGTGACATC CGAAAGAAGG
241ATATCAATAA TATTGTCAAG ACCCTGCATG AATGGTGTGA TGGCTGTGAA GCAGTTCTAC
301TGGGCATCGA GCAGCAAGTT CTGAGAGCCA ACCAGTACAA AGAGAACCAC AACCGAACTC
361AGCAGCAGGT AGAAGCAGAG GTTACCAACA TCAAGAAGAC ACTCAAAGCC ACCGCATCCT
421CCTCGGCTCA GGAGATGGAG CAGCAGCTGG CTGAACGGGA GTGTCCCCCT CACGCTGAGC
481AGAGGCAGCC CACCAAGAAG ATGTCCAAAG TGAAAGGTCT GGTCTCCAGC CGCCACTACC
541CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg
601aac

Download FASTA (ORF) (Full)