Construct: ORF ccsbBroadEn_12478
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009429.1_s300c1, BRDN0000391958
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- COPS7B (64708)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 64708 | COPS7B | COP9 signalosome subunit 7B | NM_001282952.2 | 100% | 100% | |
| 2 | human | 64708 | COPS7B | COP9 signalosome subunit 7B | XM_017004717.1 | 100% | 100% | |
| 3 | human | 64708 | COPS7B | COP9 signalosome subunit 7B | XM_024453043.1 | 100% | 100% | |
| 4 | human | 64708 | COPS7B | COP9 signalosome subunit 7B | XM_011511638.2 | 82.5% | 64.8% | 315_382del;513_514ins26 |
| 5 | human | 64708 | COPS7B | COP9 signalosome subunit 7B | XM_011511639.1 | 82.5% | 64.8% | 315_382del;513_514ins26 |
| 6 | human | 64708 | COPS7B | COP9 signalosome subunit 7B | XM_011511640.1 | 82.5% | 64.8% | 315_382del;513_514ins26 |
| 7 | human | 64708 | COPS7B | COP9 signalosome subunit 7B | NM_001282951.2 | 74.6% | 74.1% | 1_157del;158_159insT;160G>A |
| 8 | human | 64708 | COPS7B | COP9 signalosome subunit 7B | NM_001282949.3 | 68.2% | 68.2% | 1_219del |
| 9 | human | 64708 | COPS7B | COP9 signalosome subunit 7B | NM_001369483.1 | 59.4% | 59.4% | 1_321del |
| 10 | human | 64708 | COPS7B | COP9 signalosome subunit 7B | NM_022730.4 | 59.4% | 59.4% | 1_321del |
| 11 | human | 64708 | COPS7B | COP9 signalosome subunit 7B | NM_001282950.3 | 52.6% | 40.9% | 1_321del;636_688del;819_820ins26 |
| 12 | human | 64708 | COPS7B | COP9 signalosome subunit 7B | NM_001308381.2 | 51.7% | 40.5% | 1_321del;636_703del;834_835ins26 |
| 13 | human | 64708 | COPS7B | COP9 signalosome subunit 7B | XM_006712693.2 | 51.7% | 40.5% | 1_321del;636_703del;834_835ins26 |
| 14 | human | 64708 | COPS7B | COP9 signalosome subunit 7B | XR_001738900.2 | 21.5% | 1_442del;757_943del;1101_2182del | |
| 15 | mouse | 26895 | Cops7b | COP9 signalosome subunit 7B | XM_011248010.2 | 84.5% | 89.1% | (many diffs) |
| 16 | mouse | 26895 | Cops7b | COP9 signalosome subunit 7B | XM_006529625.3 | 57.9% | 61.1% | (many diffs) |
| 17 | mouse | 26895 | Cops7b | COP9 signalosome subunit 7B | NM_172974.2 | 55.3% | 58.3% | (many diffs) |
| 18 | mouse | 26895 | Cops7b | COP9 signalosome subunit 7B | XM_006529623.3 | 55.3% | 58.3% | (many diffs) |
| 19 | mouse | 26895 | Cops7b | COP9 signalosome subunit 7B | XM_006529624.3 | 55.3% | 58.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 537
- ORF length:
- 471
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA GTGTATCCCC TACTCCGTGT TGCTGAAAGA CCTGGAGATG CGGAATCTCC 121 GGGAACTAGA AGACCTTATC ATTGAGGCTG TCTACACTGA CATCATCCAG GGCAAGCTGG 181 ACCAGCGAAA CCAGCTGCTG GAAGTGGATT TCTGCATTGG CCGTGACATC CGAAAGAAGG 241 ATATCAATAA TATTGTCAAG ACCCTGCATG AATGGTGTGA TGGCTGTGAA GCAGTTCTAC 301 TGGGCATCGA GCAGCAAGTT CTGAGAGCCA ACCAGTACAA AGAGAACCAC AACCGAACTC 361 AGCAGCAGGT AGAAGCAGAG GTTACCAACA TCAAGAAGAC ACTCAAAGCC ACCGCATCCT 421 CCTCGGCTCA GGAGATGGAG CAGCAGCTGG CTGAACGGGA GTGTCCCCCT CACGCTGAGC 481 AGAGGCAGCC CACCAAGAAG ATGTCCAAAG TGAAAGGTCT GGTCTCCAGC CGCCACTACC 541 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 601 aac