Transcript: Human XM_011511638.2

PREDICTED: Homo sapiens COP9 signalosome subunit 7B (COPS7B), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
COPS7B (64708)
Length:
5100
CDS:
2956..3471

Additional Resources:

NCBI RefSeq record:
XM_011511638.2
NBCI Gene record:
COPS7B (64708)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011511638.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000118152 CCTGTTGGTACTGTTCCAGAA pLKO.1 3628 3UTR 100% 4.050 5.670 N COPS7B n/a
2 TRCN0000118154 CTATGGGACATACCCAGATTA pLKO.1 2847 5UTR 100% 13.200 9.240 N COPS7B n/a
3 TRCN0000118153 CCCAGATTACATAGCCAACAA pLKO.1 2859 5UTR 100% 4.950 3.465 N COPS7B n/a
4 TRCN0000118155 CCTTATCATTGAGGCTGTCTA pLKO.1 3024 CDS 100% 4.950 3.465 N COPS7B n/a
5 TRCN0000118156 GCTCTCATAAGCCAGGTCTTA pLKO.1 278 5UTR 100% 4.950 3.465 N COPS7B n/a
6 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 2618 5UTR 100% 5.625 2.813 Y KLHL30 n/a
7 TRCN0000264189 CAAGTAGCTGGGACTACAGGA pLKO_005 2486 5UTR 100% 2.640 1.320 Y LINC01098 n/a
8 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 2618 5UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011511638.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12478 pDONR223 100% 82.5% 64.8% None 315_382del;513_514ins26 n/a
2 ccsbBroad304_12478 pLX_304 0% 82.5% 64.8% V5 315_382del;513_514ins26 n/a
3 TRCN0000467104 CGGTGCTGTTCTCGTATACTCTGA pLX_317 59.6% 82.5% 64.8% V5 315_382del;513_514ins26 n/a
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