Construct: ORF ccsbBroadEn_12532
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000943.1_s300c1, BRDN0000391879
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ERI3 (79033)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79033 | ERI3 | ERI1 exoribonuclease family... | NM_001301701.1 | 80% | 80% | 1_96del |
| 2 | human | 79033 | ERI3 | ERI1 exoribonuclease family... | XM_006710891.3 | 80% | 80% | 1_96del |
| 3 | human | 79033 | ERI3 | ERI1 exoribonuclease family... | XM_017002305.1 | 80% | 80% | 1_96del |
| 4 | human | 79033 | ERI3 | ERI1 exoribonuclease family... | XM_017002304.2 | 58.4% | 58.4% | 1_273del |
| 5 | human | 79033 | ERI3 | ERI1 exoribonuclease family... | NM_001301698.2 | 49.4% | 49.4% | 1_393del |
| 6 | human | 79033 | ERI3 | ERI1 exoribonuclease family... | NM_001301699.1 | 49.4% | 49.4% | 1_393del |
| 7 | human | 79033 | ERI3 | ERI1 exoribonuclease family... | XM_017002303.2 | 49.4% | 49.4% | 1_393del |
| 8 | human | 79033 | ERI3 | ERI1 exoribonuclease family... | XM_024449712.1 | 49.4% | 49.4% | 1_393del |
| 9 | human | 79033 | ERI3 | ERI1 exoribonuclease family... | XM_017002301.1 | 38.2% | 38.2% | 1_621del |
| 10 | human | 79033 | ERI3 | ERI1 exoribonuclease family... | NM_024066.3 | 37.9% | 37.9% | 1_627del |
| 11 | human | 79033 | ERI3 | ERI1 exoribonuclease family... | NM_001301700.1 | 29.7% | 26.6% | 1_393del;596_597ins100;624_625ins53 |
| 12 | human | 79033 | ERI3 | ERI1 exoribonuclease family... | XM_017002302.1 | 29.7% | 26.6% | 1_393del;596_597ins100;624_625ins53 |
| 13 | human | 79033 | ERI3 | ERI1 exoribonuclease family... | XM_005271186.2 | 22.8% | 20.4% | 1_627del;830_831ins100;858_859ins53 |
| 14 | mouse | 140546 | Eri3 | exoribonuclease 3 | XM_017319972.2 | 94% | 99.2% | (many diffs) |
| 15 | mouse | 140546 | Eri3 | exoribonuclease 3 | XM_030253209.1 | 94% | 99.2% | (many diffs) |
| 16 | mouse | 140546 | Eri3 | exoribonuclease 3 | NM_001285902.1 | 75.2% | 79.3% | (many diffs) |
| 17 | mouse | 140546 | Eri3 | exoribonuclease 3 | XM_030253206.1 | 75.2% | 79.3% | (many diffs) |
| 18 | mouse | 140546 | Eri3 | exoribonuclease 3 | XM_030253205.1 | 66.1% | 69.7% | (many diffs) |
| 19 | mouse | 140546 | Eri3 | exoribonuclease 3 | XM_017319970.2 | 57.9% | 51.9% | (many diffs) |
| 20 | mouse | 140546 | Eri3 | exoribonuclease 3 | XM_017319971.1 | 57.9% | 51.9% | (many diffs) |
| 21 | mouse | 140546 | Eri3 | exoribonuclease 3 | XM_030253196.1 | 54.9% | 57.9% | (many diffs) |
| 22 | mouse | 140546 | Eri3 | exoribonuclease 3 | NM_001285901.1 | 46.4% | 49% | (many diffs) |
| 23 | mouse | 140546 | Eri3 | exoribonuclease 3 | NM_001356404.1 | 46.4% | 49% | (many diffs) |
| 24 | mouse | 140546 | Eri3 | exoribonuclease 3 | XM_030253198.1 | 46.4% | 49% | (many diffs) |
| 25 | mouse | 140546 | Eri3 | exoribonuclease 3 | XM_030253202.1 | 46.4% | 49% | (many diffs) |
| 26 | mouse | 140546 | Eri3 | exoribonuclease 3 | XM_030253203.1 | 46.4% | 49% | (many diffs) |
| 27 | mouse | 140546 | Eri3 | exoribonuclease 3 | XM_030253204.1 | 46.4% | 49% | (many diffs) |
| 28 | mouse | 140546 | Eri3 | exoribonuclease 3 | XM_030253199.1 | 42.8% | 45.1% | (many diffs) |
| 29 | mouse | 140546 | Eri3 | exoribonuclease 3 | NM_001285899.1 | 40.6% | 42.9% | (many diffs) |
| 30 | mouse | 140546 | Eri3 | exoribonuclease 3 | XM_030253201.1 | 40.3% | 42.6% | (many diffs) |
| 31 | mouse | 140546 | Eri3 | exoribonuclease 3 | XM_017319961.2 | 38.6% | 34.8% | (many diffs) |
| 32 | mouse | 140546 | Eri3 | exoribonuclease 3 | XM_017319962.2 | 38.6% | 34.8% | (many diffs) |
| 33 | mouse | 140546 | Eri3 | exoribonuclease 3 | XM_017319964.2 | 38.6% | 34.8% | (many diffs) |
| 34 | mouse | 140546 | Eri3 | exoribonuclease 3 | XM_017319965.2 | 38.6% | 34.8% | (many diffs) |
| 35 | mouse | 140546 | Eri3 | exoribonuclease 3 | XM_017319966.2 | 38.6% | 34.8% | (many diffs) |
| 36 | mouse | 140546 | Eri3 | exoribonuclease 3 | XM_017319967.1 | 38.6% | 34.8% | (many diffs) |
| 37 | mouse | 140546 | Eri3 | exoribonuclease 3 | XM_030253197.1 | 38.3% | 40.4% | (many diffs) |
| 38 | mouse | 140546 | Eri3 | exoribonuclease 3 | NM_001356405.1 | 35.9% | 37.9% | (many diffs) |
| 39 | mouse | 140546 | Eri3 | exoribonuclease 3 | NM_080469.4 | 35.7% | 37.6% | (many diffs) |
| 40 | mouse | 140546 | Eri3 | exoribonuclease 3 | XM_030253194.1 | 33.5% | 35.3% | (many diffs) |
| 41 | mouse | 140546 | Eri3 | exoribonuclease 3 | XM_017319960.2 | 30.8% | 27.8% | (many diffs) |
| 42 | mouse | 140546 | Eri3 | exoribonuclease 3 | XM_011240437.3 | 30.6% | 27.7% | (many diffs) |
| 43 | mouse | 140546 | Eri3 | exoribonuclease 3 | XR_003954877.1 | 28.2% | (many diffs) | |
| 44 | mouse | 140546 | Eri3 | exoribonuclease 3 | XM_030253200.1 | 27.9% | 26.2% | (many diffs) |
| 45 | mouse | 140546 | Eri3 | exoribonuclease 3 | XM_030253207.1 | 27.9% | 26.2% | (many diffs) |
| 46 | mouse | 140546 | Eri3 | exoribonuclease 3 | XM_030253208.1 | 27.9% | 26.2% | (many diffs) |
| 47 | mouse | 140546 | Eri3 | exoribonuclease 3 | XM_030253195.1 | 21.4% | 20.1% | (many diffs) |
| 48 | mouse | 140546 | Eri3 | exoribonuclease 3 | XR_003954875.1 | 20.2% | (many diffs) | |
| 49 | mouse | 140546 | Eri3 | exoribonuclease 3 | XR_003954876.1 | 19.8% | (many diffs) | |
| 50 | mouse | 140546 | Eri3 | exoribonuclease 3 | XR_003954874.1 | 18.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 450
- ORF length:
- 384
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGT GGATGGTCAG CCAAGCCTGC AGCAAGTGCT GGAGAGGGTC GATGAATGGA 121 TGGCGAAGGA AGGCCTCTTA GATCCAAACG TCAAGTCAAT TTTTGTCACC TGTGGAGACT 181 GGGACTTAAA AGTCATGCTC CCAGGCCAGT GCCAGTACTT GGGCTTGCCA GTGGCGGATT 241 ACTTCAAGCA GTGGATTAAT CTGAAAAAGG CTTACAGCTT CGCCATGGGC TGCTGGCCCA 301 AGAATGGACT TCTAGACATG AACAAGGGCC TCAGCCTGCA ACACATAGGC CGGCCCCACA 361 GCGGCATTGA CGACTGCAAG AACATTGCCA ACATCATGAA GACACTCGCC TATCGAGGCT 421 TCATCTTCAA GCAGACATCG AAGCCGTTCT GCCCAACTTT CTTGTACAAA GTtggcatta 481 taagaaagca ttgcttatca atttgttgca acgaac