Transcript: Human XM_017002302.1

PREDICTED: Homo sapiens ERI1 exoribonuclease family member 3 (ERI3), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ERI3 (79033)
Length:
827
CDS:
37..663

Additional Resources:

NCBI RefSeq record:
XM_017002302.1
NBCI Gene record:
ERI3 (79033)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017002302.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000138384 CACCGGGATTATTCAAGCCAT pLKO.1 411 CDS 100% 2.640 3.696 N ERI3 n/a
2 TRCN0000134696 GATCCAAACGTCAAGTCAATT pLKO.1 505 CDS 100% 13.200 10.560 N ERI3 n/a
3 TRCN0000135044 CAAGAACATTGCCAACATCAT pLKO.1 641 CDS 100% 4.950 3.960 N ERI3 n/a
4 TRCN0000178220 GATTACTTCAAGCAGTGGATT pLKO.1 601 CDS 100% 4.950 3.465 N Eri3 n/a
5 TRCN0000293052 GATTACTTCAAGCAGTGGATT pLKO_005 601 CDS 100% 4.950 3.465 N Eri3 n/a
6 TRCN0000134512 GATTGAGTCTACCTTTCACAT pLKO.1 339 CDS 100% 4.950 3.465 N ERI3 n/a
7 TRCN0000135397 GCTTCATCTTCAAGCAGACAT pLKO.1 682 3UTR 100% 4.950 3.465 N ERI3 n/a
8 TRCN0000138575 CCTCAGGAAATCATCGAGTTC pLKO.1 286 CDS 100% 4.050 2.835 N ERI3 n/a
9 TRCN0000136445 CATCTTCAAGCAGACATCGAA pLKO.1 686 3UTR 100% 3.000 2.100 N ERI3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017002302.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12532 pDONR223 100% 29.7% 26.6% None 1_393del;596_597ins100;624_625ins53 n/a
2 ccsbBroad304_12532 pLX_304 0% 29.7% 26.6% V5 1_393del;596_597ins100;624_625ins53 n/a
3 TRCN0000466801 TGCCTATACCACAGTATAAGGTTT pLX_317 64.1% 29.7% 26.6% V5 1_393del;596_597ins100;624_625ins53 n/a
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