Construct: ORF ccsbBroadEn_12559

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013216.1_s300c1, BRDN0000385670
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DCAF10 (79269)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79269 DCAF10 DDB1 and CUL4 associated fa... XM_017015129.1 85.5% 85.2% 93G>C;150_260del
2 human 79269 DCAF10 DDB1 and CUL4 associated fa... NM_001286810.1 57.1% 56.9% 1_384del;477G>C;534_644del
3 human 79269 DCAF10 DDB1 and CUL4 associated fa... XM_017015128.1 48.3% 48.2% 1_705del;798G>C
4 human 79269 DCAF10 DDB1 and CUL4 associated fa... XM_005251578.4 44.7% 44.6% 1_705del;798G>C;855_965del
5 human 79269 DCAF10 DDB1 and CUL4 associated fa... XM_005251577.4 42.2% 42.1% 1_903del;996G>C
6 human 79269 DCAF10 DDB1 and CUL4 associated fa... NM_024345.5 39.4% 39.3% 1_903del;996G>C;1053_1163del
7 human 79269 DCAF10 DDB1 and CUL4 associated fa... XR_929331.2 8.1% (many diffs)
8 human 79269 DCAF10 DDB1 and CUL4 associated fa... XR_002956810.1 8% (many diffs)
9 human 79269 DCAF10 DDB1 and CUL4 associated fa... XR_002956809.1 7.8% (many diffs)
10 human 79269 DCAF10 DDB1 and CUL4 associated fa... XR_002956808.1 7.7% (many diffs)
11 mouse 242418 Dcaf10 DDB1 and CUL4 associated fa... XM_006537912.3 40.6% 42.4% (many diffs)
12 mouse 242418 Dcaf10 DDB1 and CUL4 associated fa... NM_153167.2 35.8% 37.4% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
729
ORF length:
663
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCG AATGAGGTTA ACACCAGATT GTTCCAAAAT GTTGATTTCA ACGTCCTCTG
121GATATCTCTT AATTTTGCAT GACCTTGACT TAACTAACTC TTTAGAAGTA GGCAGCTATC
181CCATTTTAAG AGCAAGAAGA ACTACTTCAA GTTCAGGAGT TTCACCACGA AATAGTCTTG
241AAGTCGTAAC CCCTGAAGTT CTTGGTGAGA GTGACCACGG AAACTGCATC ACGTCCTTAC
301AGCTGCACCC AAAAGGCTGG GCCACTCTTC TTCGGTGCTC AAGCAACAGT GATGATGAGG
361AGTGTACTTG TGTCTATGAA TTCCAAGAAG GAGCTCCAGT GCGACCTGTC TCACCTCGCT
421GTTCTCTACG ACTGACTCAT TACATTGAAG AAGCCAATGT AGGCAGGGGT TACATCAAAG
481AACTTTGCTT CAGCCCCGAT GGACGAATGA TTTCTTCCCC ACATGGCTAT GGGATTCGCT
541TGTTGGGATT TGACAAACAG TGCAGTGAAC TTGTTGACTG CTTGCCCAAA GAAGCCAGTC
601CCCTGCGGGT GATCCGTTCT CTGTACTCTC ATAATGATGT GGTACTGACA ACAAAGTTCT
661CTCCAACACA TTGTCAGATT GCCTCAGGGT GCCTTAGTGG ACGGGTTTCT TTGTATCAGC
721CAAAGTTTTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
781tttgttgcaa cgaac

Download FASTA (ORF) (Full)