Construct: ORF ccsbBroadEn_12603
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017132.1_s300c1, BRDN0000387564
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- WDR59 (79726)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79726 | WDR59 | WD repeat domain 59 | NM_001324171.1 | 100% | 100% | |
| 2 | human | 79726 | WDR59 | WD repeat domain 59 | NM_001324172.1 | 82.4% | 79.3% | (many diffs) |
| 3 | human | 79726 | WDR59 | WD repeat domain 59 | NM_030581.4 | 58.5% | 58.6% | 1713_2922delinsG |
| 4 | human | 79726 | WDR59 | WD repeat domain 59 | XM_005256146.3 | 57.4% | 57.5% | 1713_2979delinsG |
| 5 | human | 79726 | WDR59 | WD repeat domain 59 | XR_933430.2 | 48.6% | 1_106del;1819_3518delinsG | |
| 6 | human | 79726 | WDR59 | WD repeat domain 59 | XM_017023667.2 | 32.7% | 32.7% | 0_1ins756;957_2166delinsG |
| 7 | human | 79726 | WDR59 | WD repeat domain 59 | XM_017023668.2 | 32.7% | 32.7% | 0_1ins756;957_2166delinsG |
| 8 | human | 79726 | WDR59 | WD repeat domain 59 | XM_024450445.1 | 32% | 32.1% | 0_1ins756;957_2223delinsG |
| 9 | human | 79726 | WDR59 | WD repeat domain 59 | XM_017023669.1 | 26.5% | 25.3% | 0_1ins841;44_45ins80;792_2058delinsG |
| 10 | human | 79726 | WDR59 | WD repeat domain 59 | XM_024450446.1 | 26.5% | 25.3% | 0_1ins841;44_45ins80;792_2058delinsG |
| 11 | human | 79726 | WDR59 | WD repeat domain 59 | XM_011523332.2 | 24.1% | 21.4% | 0_1ins988;110_134del;750_2016delinsG |
| 12 | human | 79726 | WDR59 | WD repeat domain 59 | XM_017023670.1 | 24.1% | 21.4% | 0_1ins988;110_134del;750_2016delinsG |
| 13 | human | 105371343 | LOC105371343 | uncharacterized LOC105371343 | XR_933739.2 | 11.5% | (many diffs) | |
| 14 | mouse | 319481 | Wdr59 | WD repeat domain 59 | XM_011248402.1 | 66.9% | 72.5% | (many diffs) |
| 15 | mouse | 319481 | Wdr59 | WD repeat domain 59 | XM_006531083.1 | 51.7% | 56% | (many diffs) |
| 16 | mouse | 319481 | Wdr59 | WD repeat domain 59 | NM_001170742.1 | 51.6% | 55.9% | (many diffs) |
| 17 | mouse | 319481 | Wdr59 | WD repeat domain 59 | NM_176923.4 | 50.7% | 54.9% | (many diffs) |
| 18 | mouse | 319481 | Wdr59 | WD repeat domain 59 | XM_006531082.1 | 50.7% | 54.9% | (many diffs) |
| 19 | mouse | 319481 | Wdr59 | WD repeat domain 59 | NM_001170743.1 | 50.6% | 54.8% | (many diffs) |
| 20 | mouse | 319481 | Wdr59 | WD repeat domain 59 | XR_387752.1 | 31.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1779
- ORF length:
- 1713
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGCGCGATGG AGCAGCGAAA ACGTGGTTGT AGAGTTCCGT GACTCCCAGG 121 CAACTGCGAT GTCTGTGGAC TGTCTTGGGC AGCATGCAGT GCTTTCTGGC CGCAGATTCT 181 TATACATCGT CAATCTAGAT GCCCCTTTCG AAGGTCACCG AAAGATCTCT CGCCAGAGCA 241 AATGGGACAT TGGAGCTGTG CAGTGGAATC CTCATGACAG CTTTGCACAC TATTTTGCGG 301 CTTCGAGTAA CCAACGAGTA GACCTTTACA AGTGGAAAGA CGGCAGTGGG GAAGTTGGCA 361 CAACCTTACA AGGCCACACT CGTGTCATCA GCGACTTGGA CTGGGCGGTG TTTGAGCCTG 421 ACCTCCTGGT TACCAGCTCT GTGGACACCT ACATCTACAT TTGGGATATC AAAGACACAA 481 GGAAACCTAC TGTTGCACTG TCTGCTGTTG CGGGTGCCTC CCAGGTCAAA TGGAATAAAA 541 AAAATGCTAA CTGCCTTGCC ACCAGCCATG ACGGCGATGT GCGGATATGG GATAAGAGGA 601 AACCCAGTAC AGCAGTGGAA TATCTAGCCG CCCACCTCTC CAAAATCCAT GGCCTGGACT 661 GGCACCCAGA CAGCGAGCAC ATTCTTGCTA CCTCCAGTCA AGACAATTCT GTGAAGTTCT 721 GGGATTACCG CCAGCCTCGG AAATACCTCA ATATTCTTCC TTGCCAGGTG CCTGTCTGGA 781 AGGCCAGATA CACACCTTTC AGCAATGGAT TGGTGACTGT GATGGTTCCC CAGCTGCGGA 841 GGGAAAACAG CCTTCTCCTG TGGAATGTCT TTGACTTGAA CACCCCAGTC CACACCTTCG 901 TGGGGCATGA TGATGTGGTC CTGGAGTTCC AGTGGAGGAA GCAGAAGGAA GGGTCCAAGG 961 ACTATCAACT GGTGACGTGG TCCCGGGATC AGACCTTGAG AATGTGGCGG GTGGATTCCC 1021 AGATGCAGAG GCTTTGTGCA AATGACATAT TAGATGGTGT TGATGAGTTC ATTGAGAGTA 1081 TTTCCCTTCT GCCGGAACCT GAGAAGACCC TGCACACTGA AGATACAGAT CACCAGCACA 1141 CTGCAAGCCA TGGGGAGGAA GAAGCCCTAA AAGAAGATCC CCCTAGAAAT CTCCTGGAAG 1201 AGAGGAAATC AGATCAACTG GGGCTGCCTC AGACCTTGCA GCAGGAATTC TCCCTGATCA 1261 ATGTGCAAAT CCGGAATGTC AATGTGGAGA TGGATGCGGC AGACAGGAGC TGCACAGTGT 1321 CTGTGCACTG CAGCAACCAT CGTGTCAAGA TGCTGGTGAA GTTCCCTGCA CAGTACCCAA 1381 ACAACGCCGC CCCTTCCTTC CAGTTTATTA ACCCCACAAC CATCACATCC ACCATGAAAG 1441 CTAAGCTGCT GAAGATCCTG AAGGACACAG CCCTGCAGAA AGTGAAGCGT GGCCAGAGCT 1501 GCCTGGAGCC CTGCCTGCGC CAGCTCGTCT CCTGCCTTGA GTCCTTTGTG AACCAGGAAG 1561 ACAGCGCTTC CAGCAACCCG TTTGCACTCC CCAACTCTGT CACTCCCCCC TTACCGACGT 1621 TTGCGCGGGT GACCACGGCT TACGGGTCGT ACCAGGACGC CAACATTCCC TTTCCTAGGA 1681 CTTCTGGGGC CAGGTTCTGC GGAGCAGGTT ACCTGGTATA TTTCACAAGG CCCATGACAA 1741 TGCATCGGGC GGTGTCTCCC ACAGAGCCTA CTCCGAGGTG CCCAACTTTC TTGTACANAA 1801 GTtggcatta taagaaagca ttgcttatca atttgttgca acgaac