Construct: ORF ccsbBroadEn_12619

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001870.1_s300c1, BRDN0000386501
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HHIPL2 (79802)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79802 HHIPL2 HHIP like 2 NM_024746.4 73% 73% 1_585del
2 human 79802 HHIPL2 HHIP like 2 XM_024449814.1 71.1% 71.1% 1_585del;1804_1860del
3 human 79802 HHIPL2 HHIP like 2 XM_011509986.1 57.1% 54.6% (many diffs)
4 human 79802 HHIPL2 HHIP like 2 XM_017002350.1 40% 39.9% (many diffs)
5 mouse 78772 Hhipl2 hedgehog interacting protei... NM_001308052.1 79.5% 78.4% (many diffs)
6 mouse 78772 Hhipl2 hedgehog interacting protei... XM_011249736.2 78.6% 77.5% (many diffs)
7 mouse 78772 Hhipl2 hedgehog interacting protei... XM_011249737.2 78.6% 77.5% (many diffs)
8 mouse 78772 Hhipl2 hedgehog interacting protei... XM_017312944.1 78.6% 77.5% (many diffs)
9 mouse 78772 Hhipl2 hedgehog interacting protei... XM_011249734.2 68.6% 67.7% (many diffs)
10 mouse 78772 Hhipl2 hedgehog interacting protei... XM_011249735.2 68.6% 67.7% (many diffs)
11 mouse 78772 Hhipl2 hedgehog interacting protei... NM_030175.5 61.3% 60.4% (many diffs)
12 mouse 78772 Hhipl2 hedgehog interacting protei... XM_011249733.2 60.8% 59.9% (many diffs)
13 mouse 78772 Hhipl2 hedgehog interacting protei... XR_880811.1 46.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1653
ORF length:
1587
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGT GGCCCAAGAT CCTCAGGGCT GCCTGCAGCT CTGCCTGAGC GAGGTGGCCA
121ACGGGCTGAG GAACCCCGTC TCCATGGTCC ATGCTGGGGA CGGCACCCAT CGCTTCTTTG
181TTGCCGAGCA GGTAGGAGTG GTGTGGGTCT ACCTCCCTGA TGGGAGTCGC CTGGAGCAAC
241CCTTCCTGGA CCTCAAGAAC ATCGTGTTGA CCACCCCATG GATCGGGGAT GAGAGAGGCT
301TCTTGGGGTT GGCTTTTCAC CCCAAATTCC GCCACAATCG CAAGTTCTAT ATTTATTATT
361CGTGCCTGGA CAAGAAGAAG GTAGAAAAGA TCCGAATTAG TGAGATGAAG GTTTCTCGGG
421CTGATCCTAA CAAAGCTGAC CTGAAATCAG AGAGGGTCAT CTTGGAGATT GAAGAACCAG
481CCTCAAACCA TAATGGCGGA CAACTTCTTT TTGGCCTGGA TGGCTATATG TACATATTCA
541CTGGGGACGG GGGACAGGCT GGAGATCCCT TTGGCCTGTT TGGAAATGCT CAGAACAAAA
601GTTCCCTGCT GGGAAAAGTT TTAAGGATCG ATGTGAACAG GGCAGGCTCA CATGGCAAGC
661GGTACCGAGT CCCCTCGGAC AATCCATTTG TTTCTGAGCC AGGGGCCCAC CCCGCCATCT
721ATGCCTATGG GATCAGGAAC ATGTGGCGTT GTGCTGTGGA CCGAGGGGAC CCCATCACGC
781GCCAGGGCCG AGGCCGGATA TTCTGTGGGG ACGTGGGCCA GAACAGGTTT GAAGAGGTTG
841ACCTCATTTT GAAAGGTGGA AACTATGGCT GGAGAGCAAA GGAAGGGTTT GCATGTTATG
901ACAAAAAACT TTGTCACAAT GCCTCTTTGG ATGATGTTCT GCCAATCTAT GCTTATGGCC
961ATGCAGTGGG GAAGTCAGTC ACTGGAGGTT ATGTCTATCG TGGTTGTGAA TCCCCAAATC
1021TCAATGGCCT GTATATCTTT GGAGACTTCA TGAGTGGTCG ACTTATGGCT TTGCAGGAAG
1081ATAGAAAAAA CAAGAAATGG AAGAAGCAGG ATCTTTGCCT GGGCAGCACC ACGTCCTGTG
1141CCTTCCCAGG GCTGATCAGC ACCCATAGCA AGTTCATCAT CTCCTTTGCT GAAGATGAAG
1201CAGGGGAGCT GTATTTCCTG GCGACCTCTT ACCCAAGTGC CTATGCACCA CGTGGATCTA
1261TTTACAAGTT TGTTGACCCC TCAAGGCGAG CACCCCCAGG CAAGTGCAAA TACAAGCCAG
1321TGCCCGTGAG AACCAAGAGT AAGCGGATCC CGTTCAGACC ACTCGCCAAG ACAGTCTTGG
1381ACTTGCTAAA GGAACAATCA GAGAAAGCTG CTAGAAAATC TTCCAGTGCA ACCTTAGCTT
1441CTGGCCCAGC CCAGGGTTTG TCTGAGAAAG GCTCCTCCAA GAAGCTGGCT TCTCCTACAA
1501GCAGCAAGAA TACATTGCGA GGGCCTGGTA CAAAGAAGAA AGCCAGAGTG GGGCCCCACG
1561TCCGCCAGGG CAAGAGGAGG AAGAGCCTGA AAAGCCACAG TGGCAGGATG AGGCCATCAG
1621CAGAGCAGAA GCGAGCTGGC AGAAGTCTCC CTTGCCCAAC TTTCTTGTAC AAAGTtggca
1681ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)

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