Construct: ORF ccsbBroadEn_12637

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000554.1_s300c1, BRDN0000392868
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NEK11 (79858)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79858 NEK11 NIMA related kinase 11 NM_001321223.1 100% 100%
2 human 79858 NEK11 NIMA related kinase 11 NM_145910.4 97.3% 96.6% (many diffs)
3 human 79858 NEK11 NIMA related kinase 11 XM_017007221.1 91.9% 91.9% 335_460del
4 human 79858 NEK11 NIMA related kinase 11 XM_017007222.1 89.5% 88.9% (many diffs)
5 human 79858 NEK11 NIMA related kinase 11 XM_017007220.1 89.5% 89% (many diffs)
6 human 79858 NEK11 NIMA related kinase 11 NM_001146003.2 79.5% 78.1% (many diffs)
7 human 79858 NEK11 NIMA related kinase 11 NM_001353028.2 79.5% 78.1% (many diffs)
8 human 79858 NEK11 NIMA related kinase 11 NM_001353029.2 79.5% 78.1% (many diffs)
9 human 79858 NEK11 NIMA related kinase 11 NM_001353026.2 74.3% 73% (many diffs)
10 human 79858 NEK11 NIMA related kinase 11 XM_024453755.1 74.3% 73% (many diffs)
11 human 79858 NEK11 NIMA related kinase 11 NM_001321220.2 73.8% 72.6% (many diffs)
12 human 79858 NEK11 NIMA related kinase 11 NM_001353023.2 73.8% 72.6% (many diffs)
13 human 79858 NEK11 NIMA related kinase 11 NM_024800.5 73.8% 72.6% (many diffs)
14 human 79858 NEK11 NIMA related kinase 11 NM_001353024.2 73.7% 72.4% (many diffs)
15 human 79858 NEK11 NIMA related kinase 11 NM_001353025.2 73.7% 72.4% (many diffs)
16 human 79858 NEK11 NIMA related kinase 11 NM_001353030.2 73.5% 72.1% (many diffs)
17 human 79858 NEK11 NIMA related kinase 11 NM_001353031.2 73.5% 72.1% (many diffs)
18 human 79858 NEK11 NIMA related kinase 11 NM_001321221.2 69.3% 68.1% (many diffs)
19 human 79858 NEK11 NIMA related kinase 11 NM_001353022.2 69.3% 68.1% (many diffs)
20 human 79858 NEK11 NIMA related kinase 11 XM_017007206.1 69.3% 68.1% (many diffs)
21 human 79858 NEK11 NIMA related kinase 11 XM_017007207.1 69.3% 68.1% (many diffs)
22 human 79858 NEK11 NIMA related kinase 11 XM_017007208.1 69.3% 68.1% (many diffs)
23 human 79858 NEK11 NIMA related kinase 11 XM_017007209.1 69.3% 68.1% (many diffs)
24 human 79858 NEK11 NIMA related kinase 11 XM_017007210.1 69.3% 68.1% (many diffs)
25 human 79858 NEK11 NIMA related kinase 11 NM_001353036.2 68.8% 67.5% (many diffs)
26 human 79858 NEK11 NIMA related kinase 11 NM_001353027.2 68.3% 67% (many diffs)
27 human 79858 NEK11 NIMA related kinase 11 NM_001353044.2 62% 60.6% (many diffs)
28 human 79858 NEK11 NIMA related kinase 11 NM_001353045.2 62% 60.6% (many diffs)
29 human 79858 NEK11 NIMA related kinase 11 XR_001740271.1 59.3% (many diffs)
30 human 79858 NEK11 NIMA related kinase 11 NM_001321222.2 57.6% 56.3% (many diffs)
31 human 79858 NEK11 NIMA related kinase 11 NM_001353032.2 57.6% 56.3% (many diffs)
32 human 79858 NEK11 NIMA related kinase 11 XM_024453756.1 57.6% 56.3% (many diffs)
33 human 79858 NEK11 NIMA related kinase 11 NM_001353033.2 56.9% 55.2% (many diffs)
34 human 79858 NEK11 NIMA related kinase 11 NM_001353034.2 56.9% 55.2% (many diffs)
35 human 79858 NEK11 NIMA related kinase 11 XM_017007219.1 56.9% 55.2% (many diffs)
36 human 79858 NEK11 NIMA related kinase 11 NM_001353048.2 54.9% 53.5% (many diffs)
37 human 79858 NEK11 NIMA related kinase 11 XM_017007233.2 54.9% 53.5% (many diffs)
38 human 79858 NEK11 NIMA related kinase 11 NM_001353037.2 52% 50.7% (many diffs)
39 human 79858 NEK11 NIMA related kinase 11 XM_024453757.1 52% 50.7% (many diffs)
40 human 79858 NEK11 NIMA related kinase 11 NM_001353038.2 51% 49.6% (many diffs)
41 human 79858 NEK11 NIMA related kinase 11 NM_001353039.2 51% 49.6% (many diffs)
42 human 79858 NEK11 NIMA related kinase 11 NM_001353040.2 51% 49.6% (many diffs)
43 human 79858 NEK11 NIMA related kinase 11 NM_001353041.2 51% 49.6% (many diffs)
44 human 79858 NEK11 NIMA related kinase 11 NM_001353042.2 51% 49.6% (many diffs)
45 human 79858 NEK11 NIMA related kinase 11 NM_001353043.2 51% 49.6% (many diffs)
46 human 79858 NEK11 NIMA related kinase 11 XM_011513173.1 51% 49.6% (many diffs)
47 human 79858 NEK11 NIMA related kinase 11 XM_011513174.1 51% 49.6% (many diffs)
48 human 79858 NEK11 NIMA related kinase 11 XM_011513175.1 51% 49.6% (many diffs)
49 human 79858 NEK11 NIMA related kinase 11 XM_017007228.1 51% 49.6% (many diffs)
50 human 79858 NEK11 NIMA related kinase 11 XM_024453758.1 51% 49.6% (many diffs)
51 human 79858 NEK11 NIMA related kinase 11 XM_024453759.1 51% 49.6% (many diffs)
52 human 79858 NEK11 NIMA related kinase 11 XM_024453760.1 45.7% 44.4% (many diffs)
53 human 79858 NEK11 NIMA related kinase 11 NM_001321224.2 45.4% 44.1% (many diffs)
54 human 79858 NEK11 NIMA related kinase 11 NM_001353046.2 45.4% 44.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1512
ORF length:
1446
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCT GAAATTCCAA GAGGCAGCTA AGTGTGTGAG TGGATCAACA GCCATTTCCA
121CTTATCCAAA GACCTTGATT GCAAGAAGAT ACGTGCTTCA ACAAAAACTT GGCAGTGGAA
181GTTTTGGAAC TGTCTATCTG GTTTCAGACA AGAAAGCCAA ACGAGGAGAG GAATTAAAGG
241TACTTAAGGA AATATCTGTT GGAGAACTAA ATCCAAATGA AACTGTACAG GCCAATTTGG
301AAGCCCAACT CCTCTCCAAG CTGGACCACC CAGCCATTGT CAAGTTCCAT GCAAGTTTTG
361TGGAGCAAGA TAATTTCTGC ATTATCACGG AGTACTGTGA GGGCCGAGAT CTGGACGATA
421AAATTCAGGA ATATAAACAA GCTGGAAAAA TCTTTCCAGA AAATCAAATA ATAGAATGGT
481TTATCCAGCT GCTGCTGGGA GTTGACTACA TGCATGAGAG GAGGATACTT CATCGAGACT
541TAAAGTCAAA GAATGTATTT CTGAAAAATA ATCTCCTTAA AATTGGAGAT TTTGGAGTTT
601CTCGACTTCT AATGGGATCC TGTGACCTGG CCACAACTTT AACTGGAACT CCCCATTATA
661TGAGTCCTGA GGCTCTGAAA CACCAAGGCT ATGACACAAA GTCGGACATC TGGTCACTGG
721CATGCATTTT GTATGAGATG TGCTGCATGA ATCATGCATT CGCTGGCTCC AATTTCTTAT
781CCATTGTTTT AAAAATTGTT GAAGGTGACA CACCTTCTCT CCCTGAGAGA TATCCAAAAG
841AACTAAATGC CATCATGGAA AGCATGTTGA ACAAGAATCC TTCATTAAGA CCATCTGCTA
901TCGAAATTTT AAAAATCCCT TACCTTGATG AGCAGCTACA GAACCTAATG TGTAGATATT
961CAGAAATGAC TCTGGAAGAC AAAAATTTGG ATTGTCAGAA GGAGGCTGCT CATATAATTA
1021ATGCCATGCA AAAAAGGATC CACCTGCAGA CTCTGAGGGC ACTGTCAGAA GTACAGAAAA
1081TGACGCCAAG AGAAAGGATG CGGCTGAGGA AGCTCCAGGC GGCTGATGAG AAAGCCAGGA
1141AGCTGAAAAA GATTGTGGAA GAAAAATATG AAGAAAATAG CAAACGAATG CAAGAATTGA
1201GATCTCGGAA CTTTCAGCAG CTGAGTGTTG ATGTACTCCA TGAAAAAACA CATTTAAAAG
1261GAATGGAAGA AAAGGAGGAG CAACCTGAGG GAAGACTTTC TTGTTCACCC CAGGACGAGG
1321ATGAAGAGAG GTGGCAAGGC AGGGAAGAGG AATCTGATGA ACCAACTTTA GAGAACCTGC
1381CTGAGTCTCA GCCTATTCCT TCCATGGACC TCCACGAACT TGAATCAATT GTAGAGGATG
1441CCACATCTGA CCTTGGATAC CATGGAGACT GTAATCTAAT TTCACTAGAC GAATACTGGA
1501AAAATGAAAA ATACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
1561caatttgttg caacgaac

Download FASTA (ORF) (Full)

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