Construct: ORF ccsbBroadEn_12763
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001879.1_s300c1, BRDN0000396316
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SPRTN (83932)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 83932 | SPRTN | SprT-like N-terminal domain | NM_001010984.4 | 97.2% | 97.2% | 730_750del |
| 2 | human | 83932 | SPRTN | SprT-like N-terminal domain | NM_001261462.3 | 80% | 80% | 320_321ins129;601_621del |
| 3 | human | 83932 | SPRTN | SprT-like N-terminal domain | NM_032018.7 | 49.4% | 48.8% | (many diffs) |
| 4 | human | 83932 | SPRTN | SprT-like N-terminal domain | XM_006711818.3 | 40.6% | 40% | (many diffs) |
| 5 | human | 83932 | SPRTN | SprT-like N-terminal domain | XM_011544289.2 | 20.2% | 19.6% | (many diffs) |
| 6 | mouse | 244666 | Sprtn | SprT-like N-terminal domain | NM_001111141.1 | 40.4% | 42.2% | (many diffs) |
| 7 | mouse | 244666 | Sprtn | SprT-like N-terminal domain | XM_006531020.3 | 26.6% | 28.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 795
- ORF length:
- 729
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttgCGATGGA TGATGACTTG ATGTTGGCAC TGCGGCTTCA GGAGGAGTGG AACTTGCAGG 121 AGGCGGAGCG CGATCATGCC CAGGAGTCCC TGTCGCTAGT GGACGCGTCG TGGGAGTTGG 181 TGGACCCCAC ACCGGACTTG CAGGCACTGT TTGTTCAGTT TAACGACCAA TTCTTCTGGG 241 GCCAGCTGGA GGCCGTCGAG GTGAAGTGGA GCGTGCGAAT GACCCTGTGT GCTGGGATAT 301 GCAGCTATGA AGGGAAGGGT GGAATGTGTT CCATCCGTCT CAGCGAACCC CTTTTGAAGT 361 TGAGGCCAAG AAAGGATCTT GTAGAGACCC TCCTGCATGA AATGATACAT GCCTATTTAT 421 TTGTCACTAA TAACGACAAA GACCGAGAAG GGCATGGTCC AGAATTTTGT AAACATATGC 481 ATCGCATCAA CAGCCTGACT GGAGCCAATA TAACGGTATA CCATACTTTT CACGATGAGG 541 TGGATGAGTA TCGGCGACAC TGGTGGCGCT GCAATGGGCC GTGCCAGCAC AGGCCACCGT 601 ATTACGGCTA TGTCAAACGA GCTACTAACA GGGAACCCTC TGCTCATGAC TATTGGTGGG 661 CTGAGCACCA GAAAACCTGT GGAGGCACTT ACATAAAAAT CAAGGAACCA GAGAATTACT 721 CAAAAAAAGG CAAAGGAAAG GCAAAACTAG GAAAGGAACC AGTATTGGCC GCAGAGAATA 781 AAGGTACCTT CGTGTACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 841 tatcaatttg ttgcaacgaa c