Construct: ORF ccsbBroadEn_12784

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012258.1_s300c1, BRDN0000387027
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ABRAXAS1 (84142)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84142 ABRAXAS1 abraxas 1, BRCA1 A complex ... NM_001345962.2 100% 100%
2 human 84142 ABRAXAS1 abraxas 1, BRCA1 A complex ... XM_005263280.5 83.3% 83.3% 1_180del
3 human 84142 ABRAXAS1 abraxas 1, BRCA1 A complex ... NM_139076.3 73.3% 73.3% 1_327del
4 human 84142 ABRAXAS1 abraxas 1, BRCA1 A complex ... XR_001741334.2 29.1% 1_392del;743_878del;944_945ins484
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
966
ORF length:
900
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAC GTTTAGAGAG AGGCTGCTTC ACAAAAACTT GCAGGAGCAT TTTTCAAACC
121AAGACCTTGT TTTTCTGCTA TTAACACCAA GTATAATAAC AGAAAGCTGC TCTACTCATC
181GACTGGAACA TTCCTTATAT AAACCTCAAA AAGGACTTTT TCACAGGGTA CCTTTAGTGG
241TTGCCAATCT GGGCATGTCT GAACAACTGG GTTATAAAAC TGTATCAGGT TCCTGTATGT
301CCACTGGTTT TAGCCGAGCA GTACAAACAC ACAGCTCTAA ATTTTTTGAA GAAGATGGAT
361CCTTAAAGGA GGTACATAAG ATAAATGAAA TGTATGCTTC ATTACAAGAG GAATTAAAGA
421GTATATGCAA AAAAGTGGAA GACAGTGAAC AAGCAGTAGA TAAACTAGTA AAGGATGTAA
481ACAGATTAAA ACGAGAAATT GAGAAAAGGA GAGGAGCACA GATTCAGGCA GCAAGAGAGA
541AGAACATCCA AAAAGACCCT CAGGAGAACA TTTTTCTTTG TCAGGCATTA CGGACCTTTT
601TTCCAAATTC TGAATTTCTT CATTCATGTG TTATGTCTTT AAAAAATAGA CATGTTTCTA
661AAAGTAGCTG TAACTACAAC CACCATCTCG ATGTAGTAGA CAATCTGACC TTAATGGTAG
721AACACACTGA CATTCCTGAA GCTAGTCCAG CTAGTACACC ACAAATCATT AAGCATAAAG
781CCTTAGACTT AGATGACAGA TGGCAATTCA AGAGATCTCG GTTGTTAGAT ACACAAGACA
841AACGATCTAA AGCAGATACT GGTAGTAGTA ACCAAGATAA AGCATCCAAA ATGAGCAGCC
901CAGAAACAGA TGAAGAAATT GAAAAGATGA AGGGTTTTGG TGAATATTCA CGGTCTCCTA
961CATTTTGCCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt
1021gttgcaacga ac

Download FASTA (ORF) (Full)