Construct: ORF ccsbBroadEn_12791

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017269.1_s300c1, BRDN0000387047
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SETD3 (84193)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84193 SETD3 SET domain containing 3, ac... NM_199123.2 96.7% 96.2% (many diffs)
2 human 84193 SETD3 SET domain containing 3, ac... XM_011537235.1 96.7% 96.2% (many diffs)
3 human 84193 SETD3 SET domain containing 3, ac... NM_032233.3 48.7% 48.1% (many diffs)
4 human 84193 SETD3 SET domain containing 3, ac... XM_011537231.2 48.7% 48.1% (many diffs)
5 human 84193 SETD3 SET domain containing 3, ac... XM_011537232.3 48.7% 48.1% (many diffs)
6 human 84193 SETD3 SET domain containing 3, ac... XM_017021699.1 48.7% 48.1% (many diffs)
7 human 84193 SETD3 SET domain containing 3, ac... XM_017021700.1 48.7% 48.1% (many diffs)
8 human 84193 SETD3 SET domain containing 3, ac... XM_011537233.2 48.4% 43.9% (many diffs)
9 human 84193 SETD3 SET domain containing 3, ac... XM_017021701.1 48.4% 43.9% (many diffs)
10 human 84193 SETD3 SET domain containing 3, ac... XM_005268127.3 32% 29.4% (many diffs)
11 human 84193 SETD3 SET domain containing 3, ac... XM_011537234.1 32% 29.4% (many diffs)
12 human 84193 SETD3 SET domain containing 3, ac... XM_017021702.1 30.3% 23.4% (many diffs)
13 mouse 52690 Setd3 SET domain containing 3 XM_006516084.3 52.9% 51.7% (many diffs)
14 mouse 52690 Setd3 SET domain containing 3 XM_017315134.1 46.2% 42.7% (many diffs)
15 mouse 52690 Setd3 SET domain containing 3 XM_017315133.1 45.6% 42.2% (many diffs)
16 mouse 52690 Setd3 SET domain containing 3 NM_028262.3 44.8% 47.1% (many diffs)
17 mouse 52690 Setd3 SET domain containing 3 XM_006516079.3 44.3% 46.5% (many diffs)
18 mouse 52690 Setd3 SET domain containing 3 XM_006516080.3 39.5% 41.2% (many diffs)
19 mouse 52690 Setd3 SET domain containing 3 XM_006516078.3 31% 29.7% (many diffs)
20 mouse 52690 Setd3 SET domain containing 3 XM_006516082.3 24.8% 26% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
942
ORF length:
876
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG TAAGAAGAGT CGAGTAAAAA CTCAGAAATC TGGCACTGGT GCTACAGCAA
121CTGTGTCACC AAAGGAAATC TTGAACCTGA CCAGTGAGCT GCTGCAGAAA TGCAGCAGTC
181CGGCGCCTGG CCCAGGAAAA GAGTGGGAAG AGTATGTGCA GATCCGGACT CTGGTTGAGA
241AAATACGGAA AAAGCAAAAA GGTCTGTCCG TTACTTTTGA TGGAAAAAGA GAAGATTACT
301TTCCTGATCT AATGAAATGG GCCTCTGAAA ATGGGGCTTC TGTCGAGGGT TTTGAAATGG
361TTAACTTCAA AGAAGAGGGC TTTGGTTTGA GAGCAACAAG AGATATCAAG GCAGAAGAAT
421TGTTTTTATG GGTTCCACGA AAATTGCTAA TGACTGTTGA ATCTGCTAAA AATTCAGTGT
481TGGGGCCCTT ATATTCTCAA GACCGAATCC TTCAAGCCAT GGGAAACATC GCACTGGCCT
541TTCATTTGCT GTGTGAGCGA GCCAGCCCTA ACTCCTTCTG GCAGCCCTAT ATTCAAACCC
601TCCCCAGTGA ATATGACACT CCTCTCTACT TTGAAGAAGA TGAAGTTCGG TATCTTCAGT
661CCACACAAGC TATACATGAT GTCTTCAGCC AGTATAAAAA CACAGCTCGA CAGTACGCCT
721ACTTCTATAA AGTCATCCAG ACCCATCCTC ATGCCAACAA ACTACCCTTG AAGGATTCTT
781TCACTTACGA GGACTACAGG TGGGCAGTCT CTTCTGTTAT GACGAGGCAA AACCAAATTC
841CCACAGAGGA TGGTTCCCGC GTGACCCTGG CTCTGATTCC TTTATGGGAT ATGTGTAACC
901ACACCAACGG CCTGGTAACG ACCTCTTCCC CTGTGTTGTG TTGCCCAACT TTCTTGTACA
961AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)