Construct: ORF ccsbBroadEn_12820
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008894.1_s300c1, BRDN0000386968
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF512 (84450)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84450 | ZNF512 | zinc finger protein 512 | NM_001271287.1 | 100% | 100% | |
| 2 | human | 84450 | ZNF512 | zinc finger protein 512 | NM_001271288.1 | 100% | 100% | |
| 3 | human | 84450 | ZNF512 | zinc finger protein 512 | NM_001271318.1 | 100% | 100% | |
| 4 | human | 84450 | ZNF512 | zinc finger protein 512 | NM_001271289.1 | 94.2% | 94.2% | 141_142ins84 |
| 5 | human | 84450 | ZNF512 | zinc finger protein 512 | NM_032434.4 | 86.4% | 86.4% | 1_231del |
| 6 | human | 84450 | ZNF512 | zinc finger protein 512 | NM_001271286.1 | 81.6% | 81.6% | 1_228del;369_370ins84 |
| 7 | mouse | 269639 | Zfp512 | zinc finger protein 512 | XM_006503968.2 | 84.2% | 86% | (many diffs) |
| 8 | mouse | 269639 | Zfp512 | zinc finger protein 512 | NM_172993.3 | 72.8% | 74.3% | (many diffs) |
| 9 | mouse | 269639 | Zfp512 | zinc finger protein 512 | XM_006503970.3 | 47.5% | 48.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1536
- ORF length:
- 1470
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA GATGAGAAGA ATCAAGCCAG CTGCTACTTC TCATGTCGAA GGGTCAGGTG 121 GAGTATCAGC CAAGGGGAAA AGGAAACCCA GGCAGGAAGA AGATGAAGAC TATCGAGAAT 181 TTCCTCAGAA GAAGCATAAG CTTTATGGGA GGAAGCAACG GCCTAAAACT CAGCCCAATC 241 CCAAATCCCA GGCCCGTCGT ATTCGGAAGG AACCACCAGT TTATGCAGCA GGCAGTTTGG 301 AGGAGCAATG GTACTTAGAA ATCGTTGATA AAGGCAGTGT CTCCTGCCCT ACCTGCCAGG 361 CAGTGGGGAG GAAGACCATA GAGGGTTTAA AGAAACACAT GGAAAACTGC AAGCAGGAAA 421 TGTTTACTTG TCATCATTGT GGGAAACAAC TTCGTTCACT GGCAGGGATG AAGTATCATG 481 TCATGGCAAA TCATAATAGT TTGCCCATTT TGAAAGCCGG AGATGAAATA GATGAGCCAA 541 GTGAGAGGGA AAGGCTCCGA ACAGTTCTAA AGAGACTGGG AAAGCTCAGG TGCATGCGTG 601 AGAGTTGCTC CAGTAGCTTC ACCAGCATCA TGGGATATCT CTACCATGTC AGAAAATGTG 661 GCAAAGGGGC TGCAGAGCTG GAAAAGATGA CCCTGAAATG TCACCACTGT GGAAAACCAT 721 ATAGGTCGAA GGCTGGACTT GCATATCACC TGAGGTCAGA GCATGGGCCT ATATCCTTCT 781 TTCCAGAGTC AGGACAGCCA GAGTGCTTAA AGGAGATGAA CCTAGAGTCA AAGAGTGGGG 841 GCCGAGTTCA GAGACGTTCT GCCAAGATAG CTGTATACCA CCTACAGGAG CTGGCCTCTG 901 CTGAACTGGC CAAGGAATGG CCCAAGAGGA AGGTGCTTCA GGACCTGGTA CCTGATGATC 961 GAAAGTTAAA ATATACTCGT CCAGGGCTCC CTACCTTCAG CCAGGAAGTA CTACATAAAT 1021 GGAAGACAGA TATCAAGAAA TATCATCGTA TTCAGTGTCC TAACCAGGGC TGTGAGGCTG 1081 TCTACAGCAG TGTATCTGGC CTTAAAGCTC ACCTGGGCTC TTGTACATTG GGAAACTTTG 1141 TGGCTGGAAA ATACAAATGT CTTCTATGTC AGAAAGAATT TGTGTCAGAG AGTGGTGTCA 1201 AGTATCACAT CAACTCCGTC CATGCTGAGG ACTGGTTCGT TGTAAACCCA ACAACAACCA 1261 AAAGCTTTGA AAAGCTGATG AAGATAAAGC AGCGGCAGCA AGAAGAAGAA AAGCGGAGGC 1321 AGCAGCACAG GAGCAGAAGG TCTCTAAGAA GGCGGCAGCA GCCTGGCATT GAGCTTCCCG 1381 AGACAGAGCT GAGTCTTAGA GTAGGGAAGG ATCAGAGGAG GAATAATGAG GAACTGGTAG 1441 TGTCAGCCTC CTGTAAGGAA CCAGAGCAGG AGCCAGTGCC AGCACAGTTC CAGAAAGTAA 1501 AGCCCCCAAA GACTAATCAT AAACGAGGAA GGAAATACCC AACTTTCTTG TACAAAGTtg 1561 gcattataag aaagcattgc ttatcaattt gttgcaacga ac