Construct: ORF ccsbBroadEn_12839
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013784.1_s300c1, BRDN0000390856
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LOXL3 (84695)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84695 | LOXL3 | lysyl oxidase like 3 | NM_001289164.3 | 100% | 100% | |
| 2 | human | 84695 | LOXL3 | lysyl oxidase like 3 | NM_032603.5 | 80.7% | 80.7% | 475_909del |
| 3 | human | 84695 | LOXL3 | lysyl oxidase like 3 | XM_011533134.2 | 80.7% | 80.7% | 475_909del |
| 4 | human | 84695 | LOXL3 | lysyl oxidase like 3 | XM_024453176.1 | 80.7% | 80.7% | 475_909del |
| 5 | human | 84695 | LOXL3 | lysyl oxidase like 3 | XM_024453177.1 | 80.7% | 80.7% | 475_909del |
| 6 | human | 84695 | LOXL3 | lysyl oxidase like 3 | XM_024453178.1 | 80.7% | 80.7% | 475_909del |
| 7 | human | 84695 | LOXL3 | lysyl oxidase like 3 | NM_001289165.2 | 64.4% | 64.4% | 0_1ins648 |
| 8 | human | 84695 | LOXL3 | lysyl oxidase like 3 | XM_017005112.1 | 64.4% | 64.4% | 0_1ins648 |
| 9 | mouse | 16950 | Loxl3 | lysyl oxidase-like 3 | NM_013586.4 | 71.8% | 76% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1890
- ORF length:
- 1824
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCG ACCTGTCAGT GTCTGGCAGT GGAGCCCCTG GGGGCTGCTG CTGTGCCTGC 121 TGTGCAGTTC GTGCTTGGGG TCTCCGTCCC CTTCCACGGG CCCTGAGAAG AAGGCCGGGA 181 GCCAGGGGCT TCGGTTCCGG CTGGCTGGCT TCCCCAGGAA GCCCTACGAG GGCCGCGTGG 241 AGATACAGCG AGCTGGTGAA TGGGGCACCA TCTGCGATGA TGACTTCACG CTGCAGGCTG 301 CCCACATCCT CTGCCGGGAG CTGGGCTTCA CAGAGGCCAC AGGCTGGACC CACAGTGCCA 361 AATATGGCCC TGGAACAGGC CGCATCTGGC TGGACAACTT GAGCTGCAGT GGGACCGAGC 421 AGAGTGTGAC TGAATGTGCC TCCCGGGGCT GGGGGAACAG TGACTGTACG CACGATGAGG 481 ATGCTGGGGT CATCTGCAAA GACCAGCGCC TCCCTGGCTT CTCGGACTCC AATGTCATTG 541 AGGCCCGTGT CCGTCTAAAG GGCGGCGCCC ACCCTGGAGA GGGCCGGGTA GAAGTCCTGA 601 AGGCCAGCAC ATGGGGCACA GTCTGTGACC GCAAGTGGGA CCTGCATGCA GCCAGCGTGG 661 TGTGTCGGGA GCTGGGCTTC GGGAGTGCTC GAGAAGCTCT GAGTGGCGCT CGCATGGGGC 721 AGGGCATGGG TGCTATCCAC CTGAGTGAAG TTCGCTGCTC TGGACAGGAG CTCTCCCTCT 781 GGAAGTGCCC CCACAAGAAC ATCACAGCTG AGGATTGTTC ACATAGCCAG GATGCCGGGG 841 TCCGGTGCAA CCTACCTTAC ACTGGGGCAG AGACCAGGAT CCGACTCAGT GGGGGCCGCA 901 GCCAACATGA GGGGCGAGTC GAGGTGCAAA TAGGGGGACC TGGGCCCCTT CGCTGGGGCC 961 TCATCTGTGG GGATGACTGG GGGACCCTGG AGGCCATGGT GGCCTGTAGG CAACTGGGTC 1021 TGGGCTACGC CAACCACGGC CTGCAGGAGA CCTGGTACTG GGACTCTGGG AATATAACAG 1081 AGGTGGTGAT GAGTGGAGTG CGCTGCACAG GGACTGAGCT GTCCCTGGAT CAGTGTGCCC 1141 ATCATGGCAC CCACATCACC TGCAAGAGGA CAGGGACCCG CTTCACTGCT GGAGTCATCT 1201 GTTCTGAGAC TGCATCAGAT CTGTTGCTGC ACTCAGCACT GGTGCAGGAG ACCGCCTACA 1261 TCGAAGACCG GCCCCTGCAT ATGTTGTACT GTGCTGCGGA AGAGAACTGC CTGGCCAGCT 1321 CAGCCCGCTC AGCCAACTGG CCCTATGGTC ACCGGCGTCT GCTCCGATTC TCCTCCCAGA 1381 TCCACAACCT GGGACGAGCT GACTTCAGGC CCAAGGCTGG GCGCCACTCC TGGGTGTGGC 1441 ACGAGTGCCA TGGGCATTAC CACAGCATGG ACATCTTCAC TCACTATGAT ATCCTCACCC 1501 CAAATGGCAC CAAGGTGGCT GAGGGCCACA AAGCTAGTTT CTGTCTCGAA GACACTGAGT 1561 GTCAGGAGGA TGTCTCCAAG CGGTATGAGT GTGCCAACTT TGGAGAGCAA GGCATCACTG 1621 TGGGTTGCTG GGATCTCTAC CGGCATGACA TTGACTGTCA GTGGATTGAC ATCACGGATG 1681 TGAAGCCAGG AAACTACATT CTCCAGGTTG TCATCAACCC AAACTTTGAA GTAGCAGAGA 1741 GTGACTTTAC CAACAATGCA ATGAAATGTA ACTGCAAATA TGATGGACAT AGAATCTGGG 1801 TGCACAACTG CCACATTGGT GATGCCTTCA GTGAAGAGGC CAACAGGAGG TTTGAACGCT 1861 ACCCTGGCCA GACCAGCAAC CAGATTATCT ACCCAACTTT CTTGTACAAA GTtggcatta 1921 taagaaagca ttgcttatca atttgttgca acgaac