Construct: ORF ccsbBroadEn_12880
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001145.1_s300c1, BRDN0000394470
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF341 (84905)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84905 | ZNF341 | zinc finger protein 341 | NM_001282933.2 | 99.9% | 100% | 2505T>C |
| 2 | human | 84905 | ZNF341 | zinc finger protein 341 | NM_032819.4 | 99.1% | 99.1% | 913_914ins21;2484T>C |
| 3 | human | 84905 | ZNF341 | zinc finger protein 341 | NM_001282935.1 | 89.4% | 86.6% | 0_1ins73;68_69ins197;2235T>C |
| 4 | human | 84905 | ZNF341 | zinc finger protein 341 | XR_001754424.2 | 82.6% | 1_365del;1777_1790del;2811_2812ins130 | |
| 5 | human | 84905 | ZNF341 | zinc finger protein 341 | NR_104259.1 | 68.5% | (many diffs) | |
| 6 | human | 84905 | ZNF341 | zinc finger protein 341 | XR_002958536.1 | 66.3% | (many diffs) | |
| 7 | mouse | 228807 | Zfp341 | zinc finger protein 341 | NM_199304.1 | 86.4% | 89.4% | (many diffs) |
| 8 | mouse | 228807 | Zfp341 | zinc finger protein 341 | XM_011239488.2 | 85.4% | 88.3% | (many diffs) |
| 9 | mouse | 228807 | Zfp341 | zinc finger protein 341 | XR_374456.3 | 64.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2631
- ORF length:
- 2562
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCGCAGGCG ATCTTTGAGG CCCTGGAGGG AATGGACAAT CAGACCGTTC 121 TGGCTGTCCA GTCATTATTG GATGGCCAAG GAGCAGTCCC TGATCCGACA GGCCAGAGTG 181 TCAATGCGCC CCCTGCTATC CAGCCATTGG ATGACGAGGA TGTATTTCTC TGCGGGAAGT 241 GTAAGAAGCA ATTCAACTCG CTGCCAGCGT TTATGACCCA CAAGCGGGAA CAGTGCCAGG 301 GGAATGCCCC CGCCCTGGCC ACAGTCTCAC TGGCCACCAA CAGCATCTAC CCACCTTCGG 361 CAGCACCCAC AGCGGTCCAG CAGGCCCCAA CTCCTGCCAA TCGCCAGATC TCCACATACA 421 TCACAGTGCC CCCGTCCCCA CTGATCCAGA CCCTGGTGCA GGGGAACATC TTGGTGAGCG 481 ATGATGTGCT CATGTCTGCC ATGTCAGCCT TCACATCCCT GGACCAGCCC ATGCCCCAGG 541 GCCCCCCACC TGTGCAGAGC AGCCTGAACA TGCATTCCGT GCCCAGCTAC CTCACCCAGC 601 CTCCACCTCC TCCTCCACCT CCTCCACCAC TGCCCCCACC GCCACCACCT CAGCCTCCAC 661 CACCTCCACC CCAGAGCCTG GGCCCCCCTG GGCGTCCCAA CCCTGGTGGG AACGGTGTGG 721 TGGAGGTGTA CAGTGCTGCT GCGCCCCTGG CTGGGAGTGG AACGGTGGAG ATCCAGGCAC 781 TGGGGATGCA GCCCTACCCA CCCCTAGAGG TGCCAAACCA GTGTGTGGAG CCTCCAGTAT 841 ATCCCACCCC CACAGTGTAC AGCCCTGGCA AACAGGGATT CAAACCCAAA GGACCAAACC 901 CCGCCGCCCC CATGACCAGC GCCACCGGGG GCACGGTGGC CACCTTTGAC TCTCCAGCAA 961 CGCTGAAGAC CCGACGAGCT AAAGGTGCCA GGGGACTCCC GGAAGCTGCA GGGAAGCCAA 1021 AGGCTCAGAA ACTCAAGTGC TCATACTGTG ACAAGTCATT CACCAAAAAC TTTGACCTGC 1081 AGCAGCACAT CCGAAGCCAC ACCGGTGAGA AGCCCTTCCA GTGCATTGCA TGTGGCCGTG 1141 CCTTTGCCCA GAAGTCTAAT GTTAAGAAAC ACATGCAGAC CCACAAGGTG TGGCCTCCAG 1201 GACACAGTGG TGGCACCGTG TCTCGAAACT CTGTGACCGT ACAGGTCATG GCCCTGAACC 1261 CCAGCAGGCA GGAGGACGAG GAAAGCACAG GGTTGGGCCA GCCCCTGCCG GGTGCGCCAC 1321 AGCCCCAGGC CTTGTCCACA GCTGGTGAGG AAGAGGGGGA CAAGCCGGAG TCCAAGCAGG 1381 TGGTCCTCAT CGACAGCTCC TACCTGTGCC AATTCTGCCC CAGCAAATTC AGCACCTACT 1441 TCCAGCTCAA GTCTCACATG ACCCAGCATA AGAATGAGCA GGTGTACAAG TGTGTGGTCA 1501 AAAGCTGTGC CCAGACGTTC CCAAAGCTCG ACACATTTCT GGAGCACATC AAGAGCCACC 1561 AGGAGGAGCT GAGCTACCGC TGCCACCTCT GCGGCAAGGA CTTCCCCTCG CTGTACGACC 1621 TGGGCGTGCA CCAGTACTCC CACAGCCTCC TGCCACAGCA CAGCCCCAAG AAGGACAATG 1681 CCGTCTACAA GTGTGTCAAA TGTGTCAACA AATACTCCAC CCCTGAGGCC CTGGAGCACC 1741 ACCTGCAGAC CGCCACTCAC AACTTCCCCT GCCCACACTG CCAGAAGGTG TTTCCTTGTG 1801 AACGCTACCT GCGGCGTCAT CTGCCCACCC ACGGCAGCGG GGGCAGGTTC AAGTGCCAAG 1861 TGTGCAAGAA GTTCTTCCGG CGGGAGCATT ATCTCAAACT GCATGCTCAC ATCCACTCGG 1921 GTGAGAAGCC CTACAAATGC TCAGTGTGCG AGTCTGCGTT CAACCGCAAG GACAAACTGA 1981 AGAGACACAT GTTGATCCAC GAGCCCTTCA AGAAATACAA ATGCCCTTTC TCGACGCACA 2041 CAGGCTGCAG TAAGGAGTTC AACCGGCCGG ACAAGCTGAA GGCCCACATC CTCTCCCACT 2101 CTGGCATGAA GCTCCACAAA TGCGCCCTGT GCAGCAAGTC CTTCAGCCGC CGTGCCCACC 2161 TCGCCGAGCA TCAGCGCGCC CACACGGGCA ACTACAAGTT CCGCTGTGCT GGCTGCGCCA 2221 AGGGCTTTTC CCGCCACAAA TACCTCAAAG ATCACCGCTG TCGTCTCGGC CCCCAAAAGG 2281 ACAAGGACCT GCAAACCCGG CGGCCCCCCC AGAGGAGGGC AGCCCCCCGC AGTTGCGGCA 2341 GTGGTGGGCG CAAGGTGCTG ACCCCCTTGC CTGACCCGCT GGGGCTGGAG GAGCTGAAGG 2401 ACACAGGGGC TGGGCTGGTG CCCGAGGCTG TCCCCGGCAA GCCGCCCTTC GCAGAGCCGG 2461 ACGCGGTGCT GTCCATCGTT GTGGGTGGTG CGGTGGGCGC GGAAACTGAG CTGGTGGTAC 2521 CTGGACACGC TGAGGGGCTG GGCTCCAACC TGGCTCTGGC GGAGCTGCAG GCCGGGGCCG 2581 AGGGCCCATG TGCCATGCTC GCTGTGCCCG TCTACATCCA GGCCTCCGAG TTGCCAACTT 2641 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac