Construct: ORF ccsbBroadEn_12961

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002452.1_s300c1, BRDN0000393796
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ANKRD44 (91526)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 91526 ANKRD44 ankyrin repeat domain 44 XR_923062.2 81% (many diffs)
2 human 91526 ANKRD44 ankyrin repeat domain 44 NM_153697.3 63.3% 63.3% 258T>C;1101_1102ins636
3 human 91526 ANKRD44 ankyrin repeat domain 44 NM_001367496.1 57.1% 56.1% (many diffs)
4 human 91526 ANKRD44 ankyrin repeat domain 44 NM_001195144.2 57% 55.9% (many diffs)
5 human 91526 ANKRD44 ankyrin repeat domain 44 XM_005246948.2 56.9% 55.9% (many diffs)
6 human 91526 ANKRD44 ankyrin repeat domain 44 XM_006712838.3 56.8% 55.7% (many diffs)
7 human 91526 ANKRD44 ankyrin repeat domain 44 XM_011512148.2 56.1% 55.1% (many diffs)
8 human 91526 ANKRD44 ankyrin repeat domain 44 XM_005246947.2 56% 54.9% (many diffs)
9 human 91526 ANKRD44 ankyrin repeat domain 44 NM_001367497.1 53.6% 52.6% (many diffs)
10 human 91526 ANKRD44 ankyrin repeat domain 44 NM_001367495.1 52.7% 51.7% (many diffs)
11 human 91526 ANKRD44 ankyrin repeat domain 44 XM_024453216.1 50.4% 49.4% (many diffs)
12 human 91526 ANKRD44 ankyrin repeat domain 44 XR_001739037.1 41.2% (many diffs)
13 human 91526 ANKRD44 ankyrin repeat domain 44 NR_160034.1 27.3% (many diffs)
14 mouse 329154 Ankrd44 ankyrin repeat domain 44 NM_001081433.3 51.7% 54.5% (many diffs)
15 mouse 329154 Ankrd44 ankyrin repeat domain 44 XM_006496073.3 50.8% 53.6% (many diffs)
16 mouse 329154 Ankrd44 ankyrin repeat domain 44 XM_006496071.3 48.6% 51.3% (many diffs)
17 mouse 329154 Ankrd44 ankyrin repeat domain 44 XM_006496070.3 47.8% 50.4% (many diffs)
18 mouse 329154 Ankrd44 ankyrin repeat domain 44 XM_011238538.2 45.8% 48.3% (many diffs)
19 mouse 329154 Ankrd44 ankyrin repeat domain 44 XM_006496074.1 41.7% 44% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1803
ORF length:
1737
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC AGTGCTCAAA CTCACCGACC AGCCACCATT GGTTCAGGCA ATCTTCAGCG
121GTGATCCAGA GGAGATCCGG ATGCTCATCC ATAAAACTGA AGATGTGAAT ACTCTGGATT
181CTGAGAAACG AACCCCTCTT CATGTGGCCG CATTTCTGGG AGATGCAGAG ATCATTGAAC
241TCCTGATTTT GTCAGGAGCT CGTGTAAATG CCAAGGACAA CATGTGGCTG ACTCCACTGC
301ACCGGGCTGT TGCTTCCAGA AGCGAAGAAG CAGTACAGGT TTTGATTAAG CACTCAGCTG
361ATGTCAATGC AAGGGACAAG AACTGGCAGA CCCCTCTTCA TGTGGCAGCA GCCAACAAGG
421CTGTCAAATG TGCAGAAGTG ATCATTCCCC TGCTGAGCAG TGTCAATGTC TCCGACCGAG
481GGGGGCGCAC AGCCTTGCAC CATGCGGCTC TGAACGGCCA CGTGGAGATG GTCAATTTAC
541TCTTGGCCAA AGGGGCAAAT ATCAATGCAT TTGACAAGAA GGACCGGCGT GCTCTGCACT
601GGGCAGCATA CATGGGCCAC TTGGATGTTG TAGCATTGCT CATTAACCAT GGCGCAGAAG
661TGACCTGTAA GGATAAGAAG GGTTATACCC CTCTGCATGC TGCAGCCTCC AATGGACAGA
721TTAATGTTGT CAAGCATCTC CTGAACCTGG GGGTGGAGAT TGATGAAATC AATGTCTATG
781GAAATACAGC GCTTCACATC GCCTGCTACA ATGGACAGGA TGCTGTGGTT AACGAGTTGA
841TTGACTACGG TGCTAACGTG AACCAGCCAA ACAATAATGG GTTCACCCCT TTGCATTTTG
901CTGCTGCCTC CACTCATGGT GCTTTGTGTC TTGAATTGTT AGTAAACAAC GGGGCAGATG
961TTAACATTCA GAGTAAAGAT GGCAAAAGTC CACTGCACAT GACAGCTGTC CATGGAAGGT
1021TCACACGGTC ACAGACCCTC ATTCAGAATG GAGGTGAAAT TGACTGTGTG GATAAGGACG
1081GCAACACTCC TCTCCATGTG GCTGCAAGAT ACGGTCATGA GCTTTTGATT AACACCTTAA
1141TAACCAGCGG AGCTGACACA GCCAAGTGTG GAATCCATAG CATGTTCCCT TTACATTTAG
1201CTGCCCTAAA TGCTCACTCT GACTGCTGCA GAAAGTTGTT ATCATCGGGC TTTGAAATAG
1261ACACCCCAGA TAAATTTGGA AGAACGTGCC TTCATGCTGC TGCTGCAGGA GGTAATGTGG
1321AATGTATAAA ACTCTTGCAG AGCAGCGGAG CAGATTTCCA TAAAAAGGAC AAGTGTGGGA
1381GGACCCCTTT GCACTATGCA GCTGCGAATT GTCATTTCCA CTGTATTGAG ACATTAGTGA
1441CCACAGGGGC CAACGTTAAT GAAACAGATG ACTGGGGACG CACAGCTTTG CATTACGCCG
1501CTGCATCAGA CATGGATAGA AATAAGACTA TCTTAGGAAA TGCCCATGAT AATTCAGAAG
1561AACTTGAAAG AGCCAGGGAG CTGAAGGAAA AGGAAGCCAC ACTATGTCTA GAGTTTCTGC
1621TTCAAAATGA TGCAAATCCA TCTATCCGGG ACAAGGAAGG TTACAATAGC ATACATTATG
1681CTGCCGCCTA TGGGCACAGG CAGTGTCTGG AATTGGTGAG TTGTTTTGTT TTGTTTTCTC
1741TAACACACAC ACACACACAT ACCCCAAATC ACAGAGGCAT TAACTGTTTT TTTCCAGAGT
1801TGTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
1861gcaacgaac

Download FASTA (ORF) (Full)

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