Construct: ORF ccsbBroadEn_12979

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006334.1_s300c1, BRDN0000387064
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
STRADA (92335)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 92335 STRADA STE20 related adaptor alpha XM_017025314.2 87.9% 87.9% 1_87del;664_672delCAGAATCTC
2 human 92335 STRADA STE20 related adaptor alpha NM_001363791.1 80.6% 79.2% (many diffs)
3 human 92335 STRADA STE20 related adaptor alpha XM_005257801.5 79.3% 79.3% 1_174del;751_759delCAGAATCTC
4 human 92335 STRADA STE20 related adaptor alpha NM_001363790.1 76.5% 75.3% (many diffs)
5 human 92335 STRADA STE20 related adaptor alpha NM_001363789.1 75% 73.8% (many diffs)
6 human 92335 STRADA STE20 related adaptor alpha NM_001165970.2 74.5% 71% (many diffs)
7 human 92335 STRADA STE20 related adaptor alpha NM_001165969.2 73.1% 71.9% (many diffs)
8 human 92335 STRADA STE20 related adaptor alpha NM_001363788.1 66.9% 65.8% (many diffs)
9 human 92335 STRADA STE20 related adaptor alpha NM_153335.6 66% 64.9% (many diffs)
10 human 92335 STRADA STE20 related adaptor alpha NM_001003788.3 61.6% 60.5% (many diffs)
11 human 92335 STRADA STE20 related adaptor alpha XM_005257799.3 61.6% 60.5% (many diffs)
12 human 92335 STRADA STE20 related adaptor alpha XM_005257803.5 60.1% 47.5% (many diffs)
13 human 92335 STRADA STE20 related adaptor alpha NM_001003786.3 58.3% 57.3% (many diffs)
14 human 92335 STRADA STE20 related adaptor alpha XM_011525467.3 58% 57% (many diffs)
15 human 92335 STRADA STE20 related adaptor alpha NM_001363787.1 57.1% 56.2% (many diffs)
16 human 92335 STRADA STE20 related adaptor alpha XM_011525466.3 57% 56% (many diffs)
17 human 92335 STRADA STE20 related adaptor alpha NM_001363786.1 54.3% 53.4% (many diffs)
18 human 92335 STRADA STE20 related adaptor alpha NM_001003787.4 53.3% 52.4% (many diffs)
19 human 92335 STRADA STE20 related adaptor alpha XR_243688.3 24.9% (many diffs)
20 human 92335 STRADA STE20 related adaptor alpha NR_156741.2 24.3% (many diffs)
21 mouse 72149 Strada STE20-related kinase adapto... XM_006534296.3 54.1% 58.8% (many diffs)
22 mouse 72149 Strada STE20-related kinase adapto... XM_006534297.3 54.1% 58.8% (many diffs)
23 mouse 72149 Strada STE20-related kinase adapto... NM_001252449.1 52.9% 57.5% (many diffs)
24 mouse 72149 Strada STE20-related kinase adapto... NM_028126.3 51.3% 55.8% (many diffs)
25 mouse 72149 Strada STE20-related kinase adapto... XM_006534295.1 51.3% 55.8% (many diffs)
26 mouse 72149 Strada STE20-related kinase adapto... XM_006534294.3 50.3% 54.7% (many diffs)
27 mouse 72149 Strada STE20-related kinase adapto... XM_006534293.3 47.8% 52% (many diffs)
28 mouse 72149 Strada STE20-related kinase adapto... NM_001252448.1 47% 51% (many diffs)
29 mouse 72149 Strada STE20-related kinase adapto... XM_011249270.1 47% 51% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
768
ORF length:
702
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG TAGCTTTCTG CCAGAGGGAG GGTGTTACGA GCTGCTCACT GTGATAGGCA
121AAGGATTTGA GGACCTGATG ACTGTGAATC TAGCAAGGTA CAAACCAACA GGAGAGTACG
181TGACTGTACG GAGGATTAAC CTAGAAGCTT GTTCCAATGA GATGGTAACA TTCTTGCAGG
241GCGAGCTGCA TGTCTCCAAA CTCTTCAACC ATCCCAATAT CGTGCCATAT CGAGCCACTT
301TTATTGCAGA CAATGAGCTG TGGGTTGTCA CATCATTCAT GGCATACGGT TCTGCAAAAG
361ATCTCATCTG TACACACTTC ATGGATGGCA TGAATGAGCT GGCGATTGCT TACATCCTGC
421AGGGGGTGCT GAAGGCCCTC GACTACATCC ACCACATGGG ATATGTACAC AGGAGTGTCA
481AAGCCAGCCA CATCCTGATC TCTGTGGATG GGAAGGTCTA CCTGTCTGGT TTGCGCAGCA
541ACCTCAGCAT GATAAGCCAT GGGCAGCGGC AGCGAGTGGT CCACGATTTT CCCAAGTACA
601GTGTCAAGGT TCTGCCGTGG CTCAGCCCCG AGGTCCTCCA GCAGGGTTAT GATGCCAAGT
661CTGACATCTA CAGTGTGGGA ATCACAGCCT GTGAACTGGC CAACGGCCAT GTCCCCTTTA
721AGGATATGCC TGCCACCCAG GGTGAAGACT CTACGGTAAA AGGAATTTGC CCAACTTTCT
781TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)

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