Construct: ORF ccsbBroadEn_13001
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010996.1_s300c1, BRDN0000398180
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FOXP2 (93986)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 93986 | FOXP2 | forkhead box P2 | NM_014491.4 | 87.1% | 87.1% | 1_276del |
| 2 | human | 93986 | FOXP2 | forkhead box P2 | NM_001172766.3 | 86.9% | 86.9% | 1_276del;595_596insAGC |
| 3 | human | 93986 | FOXP2 | forkhead box P2 | NM_148900.3 | 85.1% | 85.1% | 1_276del;397_447del |
| 4 | human | 93986 | FOXP2 | forkhead box P2 | NM_148898.4 | 84.1% | 84.1% | 1_351del |
| 5 | human | 93986 | FOXP2 | forkhead box P2 | XM_017012801.2 | 84.1% | 84.1% | 1_351del |
| 6 | human | 93986 | FOXP2 | forkhead box P2 | NM_148899.3 | 46.8% | 46.1% | (many diffs) |
| 7 | human | 93986 | FOXP2 | forkhead box P2 | NM_001172767.2 | 45.2% | 44.5% | (many diffs) |
| 8 | human | 93986 | FOXP2 | forkhead box P2 | NR_033767.2 | 28.3% | 1_890del;2760_6601del | |
| 9 | human | 93986 | FOXP2 | forkhead box P2 | NR_033766.2 | 25.4% | (many diffs) | |
| 10 | mouse | 114142 | Foxp2 | forkhead box P2 | NM_053242.4 | 80.8% | 86.7% | (many diffs) |
| 11 | mouse | 114142 | Foxp2 | forkhead box P2 | NM_212435.1 | 80.8% | 86.7% | (many diffs) |
| 12 | mouse | 114142 | Foxp2 | forkhead box P2 | NM_001286607.1 | 78.4% | 83.7% | (many diffs) |
| 13 | mouse | 114142 | Foxp2 | forkhead box P2 | XM_017321341.1 | 78.2% | 83.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1938
- ORF length:
- 1869
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GATGACTCCC CAGGTGATCA CCCCTCAGCA AATGCAGCAG ATCCTTCAGC 121 AACAAGTCCT GTCTCCTCAG CAGCTACAAG CCCTTCTCCA ACAACAGCAG GCTGTCATGC 181 TGCAGCAGCA ACAACTACAA GAGTTTTACA AGAAACAGCA AGAGCAGTTA CATCTTCAGC 241 TTTTGCAGCA GCAGCAGCAA CAGCAGCAGC AGCAACAACA GCAGCAACAA CAGCAGCAGC 301 AACAACAACA ACAACAGCAG CAACAACAGC AGCAGCAGCA GCAACAGCAG CAGCAGCAGC 361 AACAGCATCC TGGAAAGCAA GCGAAAGAGC AGCAGCAGCA GCAGCAGCAG CAACAGCAAT 421 TGGCAGCCCA GCAGCTTGTC TTCCAGCAGC AGCTTCTCCA GATGCAACAA CTCCAGCAGC 481 AGCAGCATCT GCTCAGCCTT CAGCGTCAGG GACTCATCTC CATTCCACCT GGCCAGGCAG 541 CACTTCCTGT CCAATCGCTG CCTCAAGCTG GCTTAAGTCC TGCTGAGATT CAGCAGTTAT 601 GGAAAGAAGT GACTGGAGTT CACAGTATGG AAGACAATGG CATTAAACAT GGAGGGCTAG 661 ACCTCACTAC TAACAATTCC TCCTCGACTA CCTCCTCCAA CACTTCCAAA GCATCACCAC 721 CAATAACTCA TCATTCCATA GTGAATGGAC AGTCTTCAGT TCTAAGTGCA AGACGAGACA 781 GCTCGTCACA TGAGGAGACT GGGGCCTCTC ACACTCTCTA TGGCCATGGA GTTTGCAAAT 841 GGCCAGGCTG TGAAAGCATT TGTGAAGATT TTGGACAGTT TTTAAAGCAC CTTAACAATG 901 AACACGCATT GGATGACCGA AGCACTGCTC AGTGTCGAGT GCAAATGCAG GTGGTGCAAC 961 AGTTAGAAAT ACAGCTTTCT AAAGAACGCG AACGTCTTCA AGCAATGATG ACCCACTTGC 1021 ACATGCGACC CTCAGAGCCC AAACCATCTC CCAAACCTCT AAATCTGGTG TCTAGTGTCA 1081 CCATGTCGAA GAATATGTTG GAGACATCCC CACAGAGCTT ACCTCAAACC CCTACCACAC 1141 CAACGGCCCC AGTCACCCCG ATTACCCAGG GACCCTCAGT AATCACCCCA GCCAGTGTGC 1201 CCAATGTGGG AGCCATACGA AGGCGACATT CAGACAAATA CAACATTCCC ATGTCATCAG 1261 AAATTGCCCC AAACTATGAA TTTTATAAAA ATGCAGATGT CAGACCTCCA TTTACTTATG 1321 CAACTCTCAT AAGGCAGGCT ATCATGGAGT CATCTGACAG GCAGTTAACA CTTAATGAAA 1381 TTTACAGCTG GTTTACACGG ACATTTGCTT ACTTCAGGCG TAATGCAGCA ACTTGGAAGA 1441 ATGCAGTACG TCATAATCTT AGCCTGCACA AGTGTTTTGT TCGAGTAGAA AATGTTAAAG 1501 GAGCAGTATG GACTGTGGAT GAAGTAGAAT ACCAGAAGCG AAGGTCACAA AAGATAACAG 1561 GAAGTCCAAC CTTAGTAAAA AATATACCTA CCAGTTTAGG CTATGGAGCA GCTCTTAATG 1621 CCAGTTTGCA GGCTGCCTTG GCAGAGAGCA GTTTACCTTT GCTAAGTAAT CCTGGACTGA 1681 TAAATAATGC ATCCAGTGGC CTACTGCAGG CCGTCCACGA AGACCTCAAT GGTTCTCTGG 1741 ATCACATTGA CAGCAATGGA AACAGTAGTC CGGGCTGCTC ACCTCAGCCG CACATACATT 1801 CAATCCACGT CAAGGAAGAG CCAGTGATTG CAGAGGATGA AGACTGCCCA ATGTCCTTAG 1861 TGACAACAGC TAATCACAGT CCAGAATTAG AAGACGACAG AGAGATTGAA GAAGAGCCTT 1921 TATCTGAAGA TCTGGAATTG CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 1981 gcttatcaat ttgttgcaac gaac