Transcript: Human NM_148900.3

Homo sapiens forkhead box P2 (FOXP2), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-08-27
Taxon:
Homo sapiens (human)
Gene:
FOXP2 (93986)
Length:
6424
CDS:
375..2573

Additional Resources:

NCBI RefSeq record:
NM_148900.3
NBCI Gene record:
FOXP2 (93986)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_148900.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000426178 CCATCTCCCAAACCTCTAAAT pLKO_005 1677 CDS 100% 13.200 18.480 N FOXP2 n/a
2 TRCN0000017874 GCTAAGTAATCCTGGACTGAT pLKO.1 2294 CDS 100% 4.950 6.930 N FOXP2 n/a
3 TRCN0000426742 ATGGTTCTCTGGATCACATTG pLKO_005 2362 CDS 100% 10.800 8.640 N FOXP2 n/a
4 TRCN0000017877 GCAGCAAACAAGTGGATTGAA pLKO.1 575 CDS 100% 5.625 4.500 N FOXP2 n/a
5 TRCN0000427051 TAGACCTCACTACTAACAATT pLKO_005 1291 CDS 100% 13.200 9.240 N FOXP2 n/a
6 TRCN0000071996 GCAACAGTTCAATGAATCAAA pLKO.1 406 CDS 100% 5.625 3.938 N Foxp2 n/a
7 TRCN0000071997 GCGACATTCAGACAAATACAA pLKO.1 1856 CDS 100% 5.625 3.938 N Foxp2 n/a
8 TRCN0000017873 GCAGCAGAGATGGAAGATCAA pLKO.1 463 CDS 100% 4.950 3.465 N FOXP2 n/a
9 TRCN0000017875 CCTTAACAATGAACACGCATT pLKO.1 1523 CDS 100% 4.050 2.835 N FOXP2 n/a
10 TRCN0000017876 GCAACTTGGAAGAATGCAGTA pLKO.1 2061 CDS 100% 4.050 2.835 N FOXP2 n/a
11 TRCN0000158276 CAGCAACAACAGCAGCAACAA pLKO.1 903 CDS 100% 4.950 2.475 Y RBMS3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_148900.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13001 pDONR223 100% 85.1% 85.1% None 1_276del;397_447del n/a
2 ccsbBroad304_13001 pLX_304 0% 85.1% 85.1% V5 1_276del;397_447del n/a
3 TRCN0000479678 TTAGAAATTCCACCGCAATTTGCA pLX_317 18.3% 85.1% 85.1% V5 1_276del;397_447del n/a
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