Transcript: Human NR_033767.2

Homo sapiens forkhead box P2 (FOXP2), transcript variant 8, non-coding RNA.

Source:
NCBI, updated 2019-08-27
Taxon:
Homo sapiens (human)
Gene:
FOXP2 (93986)
Length:
6601
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_033767.2
NBCI Gene record:
FOXP2 (93986)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_033767.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000426178 CCATCTCCCAAACCTCTAAAT pLKO_005 1866 3UTR 100% 13.200 18.480 N FOXP2 n/a
2 TRCN0000017874 GCTAAGTAATCCTGGACTGAT pLKO.1 2483 3UTR 100% 4.950 6.930 N FOXP2 n/a
3 TRCN0000426742 ATGGTTCTCTGGATCACATTG pLKO_005 2551 3UTR 100% 10.800 8.640 N FOXP2 n/a
4 TRCN0000017877 GCAGCAAACAAGTGGATTGAA pLKO.1 757 3UTR 100% 5.625 4.500 N FOXP2 n/a
5 TRCN0000427051 TAGACCTCACTACTAACAATT pLKO_005 1480 3UTR 100% 13.200 9.240 N FOXP2 n/a
6 TRCN0000071996 GCAACAGTTCAATGAATCAAA pLKO.1 588 3UTR 100% 5.625 3.938 N Foxp2 n/a
7 TRCN0000071997 GCGACATTCAGACAAATACAA pLKO.1 2045 3UTR 100% 5.625 3.938 N Foxp2 n/a
8 TRCN0000017873 GCAGCAGAGATGGAAGATCAA pLKO.1 645 3UTR 100% 4.950 3.465 N FOXP2 n/a
9 TRCN0000017875 CCTTAACAATGAACACGCATT pLKO.1 1712 3UTR 100% 4.050 2.835 N FOXP2 n/a
10 TRCN0000017876 GCAACTTGGAAGAATGCAGTA pLKO.1 2250 3UTR 100% 4.050 2.835 N FOXP2 n/a
11 TRCN0000178741 CACACACATACACACACACAA pLKO.1 113 3UTR 100% 4.950 2.475 Y Cstad n/a
12 TRCN0000158276 CAGCAACAACAGCAGCAACAA pLKO.1 1092 3UTR 100% 4.950 2.475 Y RBMS3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_033767.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13001 pDONR223 100% 28.3% None 1_890del;2760_6601del n/a
2 ccsbBroad304_13001 pLX_304 0% 28.3% V5 1_890del;2760_6601del n/a
3 TRCN0000479678 TTAGAAATTCCACCGCAATTTGCA pLX_317 18.3% 28.3% V5 1_890del;2760_6601del n/a
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