Construct: ORF ccsbBroadEn_13004
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012579.1_s300c1, BRDN0000394752
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SYTL3 (94120)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 94120 | SYTL3 | synaptotagmin like 3 | NM_001242384.1 | 99.8% | 99.8% | 1644A>G;1760T>A |
| 2 | human | 94120 | SYTL3 | synaptotagmin like 3 | NM_001242394.1 | 99.8% | 99.8% | 1644A>G;1760T>A |
| 3 | human | 94120 | SYTL3 | synaptotagmin like 3 | XM_005267215.4 | 99.8% | 99.8% | 1644A>G;1760T>A |
| 4 | human | 94120 | SYTL3 | synaptotagmin like 3 | XM_006715605.3 | 99.8% | 99.8% | 1644A>G;1760T>A |
| 5 | human | 94120 | SYTL3 | synaptotagmin like 3 | XM_006715606.3 | 99.8% | 99.8% | 1644A>G;1760T>A |
| 6 | human | 94120 | SYTL3 | synaptotagmin like 3 | XM_011536254.2 | 99.8% | 99.8% | 1644A>G;1760T>A |
| 7 | human | 94120 | SYTL3 | synaptotagmin like 3 | XM_024446588.1 | 99.8% | 99.8% | 1644A>G;1760T>A |
| 8 | human | 94120 | SYTL3 | synaptotagmin like 3 | NM_001009991.3 | 88.7% | 88.6% | 512_513ins204;1440A>G;1556T>A |
| 9 | human | 94120 | SYTL3 | synaptotagmin like 3 | NM_001242395.1 | 88.7% | 88.6% | 512_513ins204;1440A>G;1556T>A |
| 10 | human | 94120 | SYTL3 | synaptotagmin like 3 | XM_017011495.1 | 71.7% | 71.8% | 512_513ins204;1314_1314delGins313 |
| 11 | human | 94120 | SYTL3 | synaptotagmin like 3 | NM_001318745.1 | 66.1% | 66% | 0_1ins618;1026A>G;1142T>A |
| 12 | human | 94120 | SYTL3 | synaptotagmin like 3 | XM_005267218.4 | 66.1% | 66% | 0_1ins618;1026A>G;1142T>A |
| 13 | human | 94120 | SYTL3 | synaptotagmin like 3 | XM_005267222.4 | 66.1% | 66% | 0_1ins618;1026A>G;1142T>A |
| 14 | human | 94120 | SYTL3 | synaptotagmin like 3 | XM_006715611.3 | 66.1% | 66% | 0_1ins618;1026A>G;1142T>A |
| 15 | human | 94120 | SYTL3 | synaptotagmin like 3 | XM_017011496.1 | 66.1% | 66% | 0_1ins618;1026A>G;1142T>A |
| 16 | human | 94120 | SYTL3 | synaptotagmin like 3 | XM_017011497.1 | 66.1% | 66% | 0_1ins618;1026A>G;1142T>A |
| 17 | human | 94120 | SYTL3 | synaptotagmin like 3 | XM_011536255.2 | 64.2% | 62.7% | (many diffs) |
| 18 | human | 94120 | SYTL3 | synaptotagmin like 3 | XM_017011498.2 | 51.2% | 51.1% | 0_1ins891;753A>G;869T>A |
| 19 | human | 94120 | SYTL3 | synaptotagmin like 3 | XM_017011499.1 | 50.4% | 45.7% | 855_856ins115;924_925ins791 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1899
- ORF length:
- 1830
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCCCAAGAA ATAGATCTGA GTGCTCTCAA GGAGTTAGAA CGCGAGGCCA 121 TTCTCCAGGT CCTGTACCGA GACCAGGCGG TTCAAAACAC AGAGGAGGAG AGGACACGGA 181 AACTGAAAAC ACACCTGCAG CATCTCCGGT GGAAAGGAGC GAAGAACACG GACTGGGAGC 241 ACAAAGAGAA GTGCTGTGCG CGCTGCCAGC AGGTGCTGGG GTTCCTGCTG CACCGGGGCG 301 CCGTGTGCCG GGGCTGCAGC CACCGCGTGT GTGCCCAGTG CCGAGTGTTC CTGAGGGGGA 361 CCCATGCCTG GAAGTGCACG GTGTGCTTCG AGGACAGGAA TGTCAAAATA AAAACTGGAG 421 AATGGTTCTA TGAGGAACGA GCCAAGAAAT TTCCAACTGG AGGCAAACAT GAGACAGTTG 481 GAGGGCAGCT CTTGCAATCT TATCAGAAGC TGAGCAAAAT TTCTGTGGTT CCTCCTACTC 541 CACCTCCTGT CAGCGAGAGC CAGTGCAGCC GCAGTCCTGG CAGGTTACAG GAATTTGGTC 601 AGTTTAGAGG ATTTAATAAG TCCGTGGAAA ATTTGTTTCT GTCTCTTGCT ACCCACGTGA 661 AAAAGCTCTC CAAATCCCAG AATGATATGA CTTCTGAGAA GCATCTTCTC GCCACGGGCC 721 CCAGGCAGTG TGTGGGACAG ACAGAGAGAC GGAGCCAGTC TGACACTGCG GTCAACGTCA 781 CCACCAGGAA GGTCAGTGCA CCAGATATTC TGAAACCTCT CAATCAAGAG GATCCCAAAT 841 GCTCTACTAA CCCTATTTTG AAGCAACAGA ATCTCCCATC CAGTCCGGCA CCCAGTACCA 901 TATTCTCTGG AGGTTTTAGA CACGGAAGTT TAATTAGCAT TGACAGCACC TGTACAGAGA 961 TGGGCAATTT TGACAATGCT AATGTCACTG GAGAAATAGA ATTTGCCATT CATTATTGCT 1021 TCAAAACCCA TTCTTTAGAA ATATGCATCA AGGCCTGTAA GAACCTTGCC TATGGAGAAG 1081 AAAAGAAGAA AAAGTGCAAT CCGTATGTGA AGACCTACCT GTTGCCCGAC AGATCCTCCC 1141 AGGGAAAGCG CAAGACTGGA GTCCAAAGGA ACACCGTGGA CCCGACCTTT CAGGAGACCT 1201 TGAAGTATCA GGTGGCCCCT GCCCAGCTGG TGACCCGGCA GCTGCAGGTC TCGGTGTGGC 1261 ATCTGGGCAC GCTGGCCCGG AGAGTGTTTC TTGGAGAAGT GATCATTCCT CTGGCCACGT 1321 GGGACTTTGA AGACAGCACA ACACAGTCCT TCCGCTGGCA TCCGCTCCGG GCCAAGGCGG 1381 AGAAATACGA AGACAGCGTT CCTCAGAGTA ATGGAGAGCT CACAGTCCGG GCTAAGCTGG 1441 TTCTCCCTTC ACGGCCCAGA AAACTCCAAG AGGCTCAAGA AGGGACAGAT CAGCCATCAC 1501 TTCATGGTCA ACTTTGTTTG GTAGTGCTAG GAGCCAAGAA TTTACCTGTG CGGCCAGATG 1561 GCACCTTGAA CTCATTTGTT AAGGGCTGTC TCACTCTGCC AGACCAACAA AAACTGAGAC 1621 TGAAGTCGCC AGTCCTGAGG AAGCAGGCTT GCCCCCAGTG GAAACACTCA TTTGTCTTCA 1681 GTGGCGTAAC CCCAGCTCAG CTGAGGCAGT CGAGCTTGGA GTTAACTGTC TGGGATCAGG 1741 CCCTCTTTGG AATGAACGAC CGCTTGCTTG GAGGAACCAG ACTTGGTTCA AAGGGAGACA 1801 CAGCTGTTGG CGGGGATGCA TGCTCACAAT CGAAGCTCCA GTGGCAGAAA GTCCTTTCCA 1861 GCCCCAATCT ATGGACAGAC ATGACTCTTG TCCTGCACTT GCCAACTTTC TTGTACAAAG 1921 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac