Construct: ORF ccsbBroadEn_13041
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002125.1_s300c1, BRDN0000390377
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OSBPL6 (114880)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 114880 | OSBPL6 | oxysterol binding protein l... | XM_017003274.2 | 56.9% | 54.5% | (many diffs) |
2 | human | 114880 | OSBPL6 | oxysterol binding protein l... | XM_017003275.1 | 56.9% | 54.5% | (many diffs) |
3 | human | 114880 | OSBPL6 | oxysterol binding protein l... | NM_001201482.1 | 54.9% | 52.6% | (many diffs) |
4 | human | 114880 | OSBPL6 | oxysterol binding protein l... | XM_017003271.2 | 54.9% | 52.6% | (many diffs) |
5 | human | 114880 | OSBPL6 | oxysterol binding protein l... | NM_001201481.2 | 54.6% | 52.3% | (many diffs) |
6 | human | 114880 | OSBPL6 | oxysterol binding protein l... | XM_017003270.1 | 54.6% | 52.3% | (many diffs) |
7 | human | 114880 | OSBPL6 | oxysterol binding protein l... | XM_017003268.2 | 53.5% | 51.2% | (many diffs) |
8 | human | 114880 | OSBPL6 | oxysterol binding protein l... | XM_017003269.2 | 53.5% | 51.2% | (many diffs) |
9 | human | 114880 | OSBPL6 | oxysterol binding protein l... | XM_017003277.2 | 53.3% | 51% | (many diffs) |
10 | human | 114880 | OSBPL6 | oxysterol binding protein l... | NM_032523.4 | 52.8% | 50.6% | (many diffs) |
11 | human | 114880 | OSBPL6 | oxysterol binding protein l... | XM_017003276.2 | 51.5% | 49.2% | (many diffs) |
12 | human | 114880 | OSBPL6 | oxysterol binding protein l... | NM_001201480.2 | 51.5% | 49.3% | (many diffs) |
13 | human | 114880 | OSBPL6 | oxysterol binding protein l... | XM_017003266.1 | 51.5% | 49.3% | (many diffs) |
14 | human | 114880 | OSBPL6 | oxysterol binding protein l... | XM_017003267.2 | 51.5% | 49.3% | (many diffs) |
15 | human | 114880 | OSBPL6 | oxysterol binding protein l... | XM_017003273.2 | 51.2% | 49% | (many diffs) |
16 | human | 114880 | OSBPL6 | oxysterol binding protein l... | XM_017003272.2 | 50.1% | 47.9% | (many diffs) |
17 | human | 114880 | OSBPL6 | oxysterol binding protein l... | XM_017003265.2 | 49.8% | 44.7% | (many diffs) |
18 | human | 114880 | OSBPL6 | oxysterol binding protein l... | NM_145739.3 | 48.6% | 46.1% | (many diffs) |
19 | human | 114880 | OSBPL6 | oxysterol binding protein l... | XM_011510539.2 | 48.2% | 46.2% | (many diffs) |
20 | human | 114880 | OSBPL6 | oxysterol binding protein l... | XM_024452655.1 | 39.7% | 37.5% | (many diffs) |
21 | human | 114880 | OSBPL6 | oxysterol binding protein l... | XM_024452654.1 | 38.2% | 36.1% | (many diffs) |
22 | mouse | 99031 | Osbpl6 | oxysterol binding protein-l... | XM_011239869.1 | 67.7% | 72.1% | (many diffs) |
23 | mouse | 99031 | Osbpl6 | oxysterol binding protein-l... | XM_011239868.2 | 49.6% | 51.5% | (many diffs) |
24 | mouse | 99031 | Osbpl6 | oxysterol binding protein-l... | XM_011239867.2 | 49.1% | 50.9% | (many diffs) |
25 | mouse | 99031 | Osbpl6 | oxysterol binding protein-l... | NM_001290734.1 | 48.3% | 50.1% | (many diffs) |
26 | mouse | 99031 | Osbpl6 | oxysterol binding protein-l... | XM_011239866.2 | 48% | 49.8% | (many diffs) |
27 | mouse | 99031 | Osbpl6 | oxysterol binding protein-l... | XM_011239865.2 | 47.8% | 49.6% | (many diffs) |
28 | mouse | 99031 | Osbpl6 | oxysterol binding protein-l... | XM_011239864.2 | 47.5% | 49.3% | (many diffs) |
29 | mouse | 99031 | Osbpl6 | oxysterol binding protein-l... | NM_001290733.1 | 46.7% | 48.5% | (many diffs) |
30 | mouse | 99031 | Osbpl6 | oxysterol binding protein-l... | XM_011239862.2 | 46.7% | 48.5% | (many diffs) |
31 | mouse | 99031 | Osbpl6 | oxysterol binding protein-l... | NM_145525.3 | 46.3% | 48% | (many diffs) |
32 | mouse | 99031 | Osbpl6 | oxysterol binding protein-l... | XM_011239859.2 | 46.3% | 48% | (many diffs) |
33 | mouse | 99031 | Osbpl6 | oxysterol binding protein-l... | XM_011239860.2 | 46.3% | 48% | (many diffs) |
34 | mouse | 99031 | Osbpl6 | oxysterol binding protein-l... | XM_011239861.2 | 46.3% | 48% | (many diffs) |
35 | mouse | 99031 | Osbpl6 | oxysterol binding protein-l... | NM_001290735.1 | 11.4% | 12.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1590
- ORF length:
- 1524
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG TTCAGATGAG AAGGGCATTT CCCCTGCTCA TAAAACATCC ACTCCAACCC 121 ATAGAAGTGC CTCCTCTTCA ACATCCTCCC AAAGGGACAG TAGGCAGAGT ATTCACATAC 181 TGGAGAGGAC TGCTTCCTCT AGCACCGAGC CCTCTGTAAG TCGGCAATTG CTAGAACCGG 241 AGCCAGTCCC CCTCTCCAAG GAAGCTGACA GCTGGGAAAT TATAGAAGGG CTGAAAATAG 301 GCCAAACCAA TGTCCAGAAA CCAGACAAAC ATGAGGGCTT TATGCTGAAG AAAAGAAAAT 361 GGCCTTTAAA AGGCTGGCAC AAGCGTTTTT TTGTCCTGGA TAATGGAATG TTAAAGTATT 421 CAAAGGCACC ACTCGATATT CAGAAAGGAA AGGTCCATGG GAGCATAGAT GTGGGACTCT 481 CAGTCATGTC AATTAAAAAG AAAGCTCGAA GAATAGACCT TGACACCGAA GAGCACATCT 541 ATCATTTGAA GGTGAAATCC CAGGACTGGT TTGATGCATG GGTCTCCAAA CTGCGACATC 601 ATCGGTTGTA TCGTCAGAAT GAAATTGTGA GATCACCAAG AGATGCTAGT TTTCACATAT 661 TTCCTTCAAC GTCCACAGCT GAATCCTCAC CAGCTGCTAA TGTTTCTGTA ATGGATGGAA 721 AGATGCAACC AAACAGCTTT CCGTGGCAGT CCCCTTTACC ATGCAGCAAT AGCCTCCCTG 781 CAACGTGCAC AACTGGCCAG AGTAAAGTGG CAGCCTGGTT ACAGGACTCG GAAGAGATGG 841 ACAGGTGTGC AGAAGATCTT GCACATTGCC AGTCAAACCT TGTGGAACTT AGCAAACTCC 901 TGCAAAATTT GGAAATACTT CAGAGAACTC AGTCAGCACC TAACTTTACT GACATGCAGG 961 TTCCTTTCAG TGCTACCATG TCACCAGTTC GCTTGCATTC CTCCAACCCC AACCTTTGTG 1021 CAGATATTGA ATTTCAGACT CCCCCTAGCC ACCTCACTGA CCCTCTGGAA AGTTCAACAG 1081 ATTATACAAA GCTGCAAGAA GAATTTTGTC TAATCGCACA GAAAGTGCAT TCTCTTTTGA 1141 AGTCTGCATT TAATAGCATA GCTATAGAGA AGGAGAAGCT GAAGCAGATG GTTTCCGAGC 1201 AGGATCACAG TAAAGGCCAC AGCACGCAGA TGGCACGGCT CCGACAGTCA CTGTCTCAGG 1261 CTGGTGAGCA AATCCATGTC AGTCTCCCCT TATCACAGCA AGTAGCCAAT GAGAGCCGCC 1321 TCTCCATGTC AGAGTCTGTT TCTGAGTTCT TTGATGCCCA AGAGGTGCTC CTCTCTGCAA 1381 GTTCGTCAGA GAATGAGGCT TCAGATGATG AGTCTTACAT CAGTGATGTG AGTGATAATA 1441 TATCTGAAGA CAACACCAGT GTTGCAGACA ATATTTCTCG GCAAAGTATG CATCATTTGA 1501 GCTTCCAGGT TGTTCTATCT ACATGCCAAA TTGCAACACG AAGACTTAAT GAACAGGCAT 1561 TCCCCCTCCC ACGCCACCCC CACCCCTGCT ACCCAACTTT CTTGTACAAA GTtggcatta 1621 taagaaagca ttgcttatca atttgttgca acgaac