Transcript: Human XM_017003276.2

PREDICTED: Homo sapiens oxysterol binding protein like 6 (OSBPL6), transcript variant X13, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
OSBPL6 (114880)
Length:
6762
CDS:
534..3137

Additional Resources:

NCBI RefSeq record:
XM_017003276.2
NBCI Gene record:
OSBPL6 (114880)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017003276.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000160736 CACCACTTGCATACACAACAT pLKO.1 2519 CDS 100% 4.950 6.930 N OSBPL6 n/a
2 TRCN0000161875 GCCAACAAACTATGAGCTGTA pLKO.1 2786 CDS 100% 4.050 3.240 N OSBPL6 n/a
3 TRCN0000105097 GCAGGCTAACTGTGTAGATAT pLKO.1 1331 CDS 100% 13.200 9.240 N Osbpl6 n/a
4 TRCN0000161428 GCAGGCTAACTGTGTAGATAT pLKO.1 1331 CDS 100% 13.200 9.240 N OSBPL6 n/a
5 TRCN0000159097 GCTGCAACCATATTCCTTAAA pLKO.1 3333 3UTR 100% 13.200 9.240 N OSBPL6 n/a
6 TRCN0000160612 CCAACATATCACATTCTGAAT pLKO.1 3157 3UTR 100% 4.950 3.465 N OSBPL6 n/a
7 TRCN0000105099 GCACAGAAAGTGCATTCTCTT pLKO.1 1584 CDS 100% 4.950 3.465 N Osbpl6 n/a
8 TRCN0000161853 GCATCAGAGAAGCAAAGAGTA pLKO.1 2937 CDS 100% 4.950 3.465 N OSBPL6 n/a
9 TRCN0000159956 GCCAACATATCACATTCTGAA pLKO.1 3156 3UTR 100% 4.950 3.465 N OSBPL6 n/a
10 TRCN0000160194 CAGACAATATTTCTCGGCAAA pLKO.1 1933 CDS 100% 4.050 2.835 N OSBPL6 n/a
11 TRCN0000160955 GCAGACAATATTTCTCGGCAA pLKO.1 1932 CDS 100% 2.160 1.512 N OSBPL6 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017003276.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13041 pDONR223 100% 51.5% 49.2% None (many diffs) n/a
2 ccsbBroad304_13041 pLX_304 0% 51.5% 49.2% V5 (many diffs) n/a
3 TRCN0000467518 TAACCGGAATGGGGTTTTACGCCT pLX_317 14.1% 51.5% 49.2% V5 (many diffs) n/a
Download CSV